Skip to content

Actions: theiagen/public_health_bioinformatics

Actions

All workflows

Actions

Loading...
Loading

Showing runs from all workflows
178 workflow run results
178 workflow run results

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

[Kraken2] Add module to recalculate abundances based on fragment length - Kraken2_ont wf and TheiaCoV_ONT wf Pytest Workflows #653: Pull request #240 opened by cimendes
November 8, 2023 11:20 18m 0s im-kraken2-ont
im-kraken2-ont
November 8, 2023 11:20 18m 0s
Nextclade Output Added Pytest Workflows #652: Pull request #239 opened by DOH-HNH0303
November 7, 2023 23:57 17m 42s DOH-HNH0303:nextclade_output_update
DOH-HNH0303:nextclade_output_update
November 7, 2023 23:57 17m 42s
Nextclade Output Added MiniWDL Check #652: Pull request #239 opened by DOH-HNH0303
November 7, 2023 23:57 1m 4s DOH-HNH0303:nextclade_output_update
DOH-HNH0303:nextclade_output_update
November 7, 2023 23:57 1m 4s
TheiaCoV_ONT_PHB Influenza Track MiniWDL Check #651: Pull request #233 synchronize by jrotieno
November 7, 2023 11:32 1m 3s jro_theiacov_ont_flu_clean
jro_theiacov_ont_flu_clean
November 7, 2023 11:32 1m 3s
TheiaCoV_ONT_PHB Influenza Track Pytest Workflows #651: Pull request #233 synchronize by jrotieno
November 7, 2023 11:32 13m 4s jro_theiacov_ont_flu_clean
jro_theiacov_ont_flu_clean
November 7, 2023 11:32 13m 4s
update ncbi-scrub task (version 2.2.1) MiniWDL Check #650: Pull request #202 synchronize by cimendes
November 7, 2023 09:06 56s im-ncbi-scrub-update
im-ncbi-scrub-update
November 7, 2023 09:06 56s
update ncbi-scrub task (version 2.2.1) Pytest Workflows #650: Pull request #202 synchronize by cimendes
November 7, 2023 09:06 4m 23s im-ncbi-scrub-update
im-ncbi-scrub-update
November 7, 2023 09:06 4m 23s
update default amrfinderplus docker image to v3.11.20 and db 2023-09-… MiniWDL Check #649: Commit 5fc24ee pushed by frankambrosio3
November 3, 2023 13:30 49s main
main
November 3, 2023 13:30 49s
update default amrfinderplus docker image to v3.11.20 and db 2023-09-… Pytest Workflows #649: Commit 5fc24ee pushed by frankambrosio3
November 3, 2023 13:30 15m 21s main
main
November 3, 2023 13:30 15m 21s
TheiaCoV_FASTA_Batch: TheiaCoV_FASTA, for many samples at once Pytest Workflows #648: Pull request #238 synchronize by cimendes
November 3, 2023 05:14 17s smw-theiacov-fasta-batch-dev
smw-theiacov-fasta-batch-dev
November 3, 2023 05:14 17s
TheiaCoV_FASTA_Batch: TheiaCoV_FASTA, for many samples at once MiniWDL Check #648: Pull request #238 synchronize by cimendes
November 3, 2023 05:14 49s smw-theiacov-fasta-batch-dev
smw-theiacov-fasta-batch-dev
November 3, 2023 05:14 49s
TheiaCoV_FASTA_Batch: TheiaCoV_FASTA, for many samples at once Pytest Workflows #647: Pull request #238 opened by sage-wright
November 2, 2023 18:56 21s smw-theiacov-fasta-batch-dev
smw-theiacov-fasta-batch-dev
November 2, 2023 18:56 21s
TheiaCoV_FASTA_Batch: TheiaCoV_FASTA, for many samples at once MiniWDL Check #647: Pull request #238 opened by sage-wright
November 2, 2023 18:56 49s smw-theiacov-fasta-batch-dev
smw-theiacov-fasta-batch-dev
November 2, 2023 18:56 49s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #646: Pull request #159 synchronize by kapsakcj
November 2, 2023 15:10 1m 6s cjk-pointfinder
cjk-pointfinder
November 2, 2023 15:10 1m 6s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction Pytest Workflows #646: Pull request #159 synchronize by kapsakcj
November 2, 2023 15:10 17m 56s cjk-pointfinder
cjk-pointfinder
November 2, 2023 15:10 17m 56s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction Pytest Workflows #645: Pull request #159 synchronize by kapsakcj
November 2, 2023 14:51 15m 22s cjk-pointfinder
cjk-pointfinder
November 2, 2023 14:51 15m 22s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #645: Pull request #159 synchronize by kapsakcj
November 2, 2023 14:51 1m 3s cjk-pointfinder
cjk-pointfinder
November 2, 2023 14:51 1m 3s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction Pytest Workflows #644: Pull request #159 synchronize by kapsakcj
November 1, 2023 17:40 17m 0s cjk-pointfinder
cjk-pointfinder
November 1, 2023 17:40 17m 0s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #644: Pull request #159 synchronize by kapsakcj
November 1, 2023 17:40 1m 8s cjk-pointfinder
cjk-pointfinder
November 1, 2023 17:40 1m 8s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #643: Pull request #159 synchronize by kapsakcj
November 1, 2023 15:28 1m 2s cjk-pointfinder
cjk-pointfinder
November 1, 2023 15:28 1m 2s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction Pytest Workflows #643: Pull request #159 synchronize by kapsakcj
November 1, 2023 15:28 16m 43s cjk-pointfinder
cjk-pointfinder
November 1, 2023 15:28 16m 43s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #642: Pull request #159 synchronize by kapsakcj
November 1, 2023 14:26 1m 16s cjk-pointfinder
cjk-pointfinder
November 1, 2023 14:26 1m 16s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction Pytest Workflows #642: Pull request #159 synchronize by kapsakcj
November 1, 2023 14:26 14m 5s cjk-pointfinder
cjk-pointfinder
November 1, 2023 14:26 14m 5s
Mercury_Prep_N_Batch: print the excluded_samples.tsv and update Docker to avoid Google SDK warning MiniWDL Check #641: Pull request #220 synchronize by sage-wright
October 27, 2023 17:47 40s smw-cat-excluded-dev
smw-cat-excluded-dev
October 27, 2023 17:47 40s
Mercury_Prep_N_Batch: print the excluded_samples.tsv and update Docker to avoid Google SDK warning Pytest Workflows #641: Pull request #220 synchronize by sage-wright
October 27, 2023 17:47 18s smw-cat-excluded-dev
smw-cat-excluded-dev
October 27, 2023 17:47 18s