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miniwdl-check.yml
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disable call caching for various workflows MiniWDL Check #665: Pull request #251 opened by kapsakcj
November 17, 2023 20:54 51s cjk-disable-call-caching
cjk-disable-call-caching
November 17, 2023 20:54 51s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #664: Pull request #159 synchronize by kapsakcj
November 16, 2023 21:31 47s cjk-pointfinder
cjk-pointfinder
November 16, 2023 21:31 47s
TheiaCoV_ONT_PHB Influenza Track MiniWDL Check #663: Pull request #233 synchronize by jrotieno
November 15, 2023 17:01 47s jro_theiacov_ont_flu_clean
jro_theiacov_ont_flu_clean
November 15, 2023 17:01 47s
TheiaProk TB: new VCF output and modification to the coverage report MiniWDL Check #662: Pull request #245 synchronize by sage-wright
November 15, 2023 15:42 53s smw-tb-2023-10-25-dev
smw-tb-2023-10-25-dev
November 15, 2023 15:42 53s
Nextclade Output Added MiniWDL Check #661: Pull request #239 synchronize by HNHalstead
November 14, 2023 01:26 48s DOH-HNH0303:nextclade_output_update
DOH-HNH0303:nextclade_output_update
November 14, 2023 01:26 48s
TheiaProk TB: new VCF output and modification to the coverage report MiniWDL Check #660: Pull request #245 synchronize by sage-wright
November 13, 2023 20:39 49s smw-tb-2023-10-25-dev
smw-tb-2023-10-25-dev
November 13, 2023 20:39 49s
TheiaProk TB: new VCF output and modification to the coverage report MiniWDL Check #659: Pull request #245 synchronize by sage-wright
November 13, 2023 20:37 57s smw-tb-2023-10-25-dev
smw-tb-2023-10-25-dev
November 13, 2023 20:37 57s
TheiaProk TB: new VCF output and modification to the coverage report MiniWDL Check #658: Pull request #245 opened by sage-wright
November 13, 2023 20:30 1m 3s smw-tb-2023-10-25-dev
smw-tb-2023-10-25-dev
November 13, 2023 20:30 1m 3s
CZGenEpi_Prep_PHB: implementing user-requested changes MiniWDL Check #657: Pull request #244 opened by sage-wright
November 13, 2023 19:40 44s smw-czgenepi-dev
smw-czgenepi-dev
November 13, 2023 19:40 44s
[Kraken2] Add module to recalculate abundances based on fragment length - Kraken2_ont wf and TheiaCoV_ONT wf MiniWDL Check #656: Pull request #240 synchronize by cimendes
November 8, 2023 14:54 56s im-kraken2-ont
im-kraken2-ont
November 8, 2023 14:54 56s
[Kraken2] Add module to recalculate abundances based on fragment length - Kraken2_ont wf and TheiaCoV_ONT wf MiniWDL Check #655: Pull request #240 synchronize by cimendes
November 8, 2023 14:19 57s im-kraken2-ont
im-kraken2-ont
November 8, 2023 14:19 57s
[Kraken2] Add module to recalculate abundances based on fragment length - Kraken2_ont wf and TheiaCoV_ONT wf MiniWDL Check #654: Pull request #240 synchronize by cimendes
November 8, 2023 11:40 44s im-kraken2-ont
im-kraken2-ont
November 8, 2023 11:40 44s
[Kraken2] Add module to recalculate abundances based on fragment length - Kraken2_ont wf and TheiaCoV_ONT wf MiniWDL Check #653: Pull request #240 opened by cimendes
November 8, 2023 11:20 44s im-kraken2-ont
im-kraken2-ont
November 8, 2023 11:20 44s
Nextclade Output Added MiniWDL Check #652: Pull request #239 opened by DOH-HNH0303
November 7, 2023 23:57 1m 4s DOH-HNH0303:nextclade_output_update
DOH-HNH0303:nextclade_output_update
November 7, 2023 23:57 1m 4s
TheiaCoV_ONT_PHB Influenza Track MiniWDL Check #651: Pull request #233 synchronize by jrotieno
November 7, 2023 11:32 1m 3s jro_theiacov_ont_flu_clean
jro_theiacov_ont_flu_clean
November 7, 2023 11:32 1m 3s
update ncbi-scrub task (version 2.2.1) MiniWDL Check #650: Pull request #202 synchronize by cimendes
November 7, 2023 09:06 56s im-ncbi-scrub-update
im-ncbi-scrub-update
November 7, 2023 09:06 56s
update default amrfinderplus docker image to v3.11.20 and db 2023-09-… MiniWDL Check #649: Commit 5fc24ee pushed by frankambrosio3
November 3, 2023 13:30 49s main
main
November 3, 2023 13:30 49s
TheiaCoV_FASTA_Batch: TheiaCoV_FASTA, for many samples at once MiniWDL Check #648: Pull request #238 synchronize by cimendes
November 3, 2023 05:14 49s smw-theiacov-fasta-batch-dev
smw-theiacov-fasta-batch-dev
November 3, 2023 05:14 49s
TheiaCoV_FASTA_Batch: TheiaCoV_FASTA, for many samples at once MiniWDL Check #647: Pull request #238 opened by sage-wright
November 2, 2023 18:56 49s smw-theiacov-fasta-batch-dev
smw-theiacov-fasta-batch-dev
November 2, 2023 18:56 49s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #646: Pull request #159 synchronize by kapsakcj
November 2, 2023 15:10 1m 6s cjk-pointfinder
cjk-pointfinder
November 2, 2023 15:10 1m 6s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #645: Pull request #159 synchronize by kapsakcj
November 2, 2023 14:51 1m 3s cjk-pointfinder
cjk-pointfinder
November 2, 2023 14:51 1m 3s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #644: Pull request #159 synchronize by kapsakcj
November 1, 2023 17:40 1m 8s cjk-pointfinder
cjk-pointfinder
November 1, 2023 17:40 1m 8s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #643: Pull request #159 synchronize by kapsakcj
November 1, 2023 15:28 1m 2s cjk-pointfinder
cjk-pointfinder
November 1, 2023 15:28 1m 2s
Resfinder improvements, added support for Shigella spp., added XDR Shigella prediction MiniWDL Check #642: Pull request #159 synchronize by kapsakcj
November 1, 2023 14:26 1m 16s cjk-pointfinder
cjk-pointfinder
November 1, 2023 14:26 1m 16s
Mercury_Prep_N_Batch: print the excluded_samples.tsv and update Docker to avoid Google SDK warning MiniWDL Check #641: Pull request #220 synchronize by sage-wright
October 27, 2023 17:47 40s smw-cat-excluded-dev
smw-cat-excluded-dev
October 27, 2023 17:47 40s