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25 Open 13 Closed
25 Open 13 Closed
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Issues list

issue when running kofamscan to annotate many .faa files at the same time
#40 opened Nov 6, 2024 by Kangda384
config.rb:26:in initialize': undefined method map' for "profile:profiles":String (NoMethodError) }.merge(initial_values.map { |k, v| [k.intern, v] }.to_h) Did you mean? tap
#38 opened Jan 31, 2024 by 11916090
1
Prokaryotic genome, eukaryotic genome, viral genome
#36 opened Dec 22, 2023 by qkqk-hub
1
wrong number of arguments
#35 opened Nov 30, 2023 by WJT0925
1
Issue when I run the analysis
#34 opened Nov 9, 2023 by queirozhanna
2
Inconsistent output formatting
#33 opened Aug 28, 2023 by spitfiredd
[Question] What criteria are used to determine significant HMMER hits?
#32 opened Jul 19, 2023 by jolespin
1
Guidance for KOfam score threshold adjustment (threshold-scale)
#30 opened Dec 25, 2022 by Bernhard-Steindl
Core dumped error when running kofamscan
#29 opened Nov 30, 2022 by arijitnus
kofam_scan multiple outputs at same time
#28 opened Nov 2, 2022 by imonteroo
query.fasta
#26 opened Jul 6, 2022 by km-2021
Incorrect hmmscan settings cause popen3 to hang rather than an error
#24 opened Sep 20, 2021 by lguangyu
2
The exec_annotaion can run on the directory that it belong instead of other directory
#23 opened Jul 12, 2021 by honghh2018
What is a good e-value cut-off?
#22 opened Mar 22, 2021 by mw55309
2
profile.yml example
#21 opened Feb 15, 2021 by thierryjanssens
The set of E-value (-E) did not work.
#20 opened Feb 4, 2021 by Jiulong-Zhao
2
hmmsearch was not run successfully
#19 opened Dec 2, 2020 by hahafengxiang
15
is kofam scan running correctly - tmp directory
#18 opened Oct 29, 2020 by soilmicrobiome
Ruby error when running the kofam workflow
#16 opened Oct 2, 2020 by ParkvilleData
2
Reorganize code and don't use require_relative in exec_annotation
#14 opened Jun 4, 2020 by duboism
1
Bacteria & Archaea hmms
#13 opened May 28, 2020 by lijier6
Mmseqs profiles for speed up
#11 opened May 17, 2020 by SilasK
3
default evalue?
#4 opened Mar 11, 2020 by soilmicrobiome
3
Which filtering parameters are recommended？
#3 opened Dec 11, 2019 by slbai01
1
suggestion to implement a "tmp directory already exists" warning
#1 opened Nov 27, 2019 by AstrobioMike
1
ProTip! Exclude everything labeled bug with -label:bug.