Which filtering parameters are recommended？

[slbai01]

Hello, I annotated the gene set with kofamscan software.

How many evalue and score filtering results do you recommend?

Thanks
shenglong

[takaram]

I don't have any specific parameters to recommend. It depends on your purpose. If you'd like to reduce false positive hits, you might want stricter parameters. If you need fewer false negatives, then loose parameters will be more appropreate.