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default evalue? #4

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soilmicrobiome opened this issue Mar 11, 2020 · 3 comments
Open

default evalue? #4

soilmicrobiome opened this issue Mar 11, 2020 · 3 comments

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@soilmicrobiome
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what is the default e value? i could not find it in the readme? Is it 0.01 as with the online version? (https://www.genome.jp/tools/kofamkoala/)
@takaram
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takaram commented Apr 26, 2020

KofamScan does not take E-value into account by default.
Any hits with its score higher than the threshold will be marked with asterisks regardless of its E-value.

@soilmicrobiome
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so is it best to filter out and only use hits with marked with an *. hits with no * are "candidate" hits?

@mw55309
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mw55309 commented Aug 30, 2023

So what's the default threshold?

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@mw55309 @takaram @soilmicrobiome