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47 Open 25 Closed
47 Open 25 Closed
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Issues list

Add documentation for installation and usage type: docs Improvements or additions to documentation
#130 opened Dec 13, 2024 by jessicasyu
@jessicasyu
Update Docker image to support patch simulations priority: medium Non-urgent but important task size: medium Estimated size of issue or PR is medium type: feature Improvement or additions to the code base
#128 opened Dec 12, 2024 by jessicasyu
Improve documentation website type: docs Improvements or additions to documentation
#125 opened Dec 9, 2024 by jessicasyu
@jessicasyu
Make default cell class behavior consistent between implementations category: sim Related to the sim subpackages package: patch Related to the patch implementation package: potts Related to the potts implementation size: small Estimated size of issue or PR is small type: feature Improvement or additions to the code base
#123 opened Nov 27, 2024 by jessicasyu
Implement dot product and cross product functions category: util Related to the util subpackages package: core Related to the core package priority: medium Non-urgent but important task size: small Estimated size of issue or PR is small type: feature Improvement or additions to the code base
#122 opened Nov 27, 2024 by Jannetty
Implement Vector class category: util Related to the util subpackages package: core Related to the core package priority: medium Non-urgent but important task size: small Estimated size of issue or PR is small
#121 opened Nov 27, 2024 by Jannetty
Update MiniBox to support Bernoulli distribution category: util Related to the util subpackages package: core Related to the core package size: xsmall Estimated size of issue or PR is xsmall type: bug Something isn't working as expected
#120 opened Nov 27, 2024 by jessicasyu
Parameterize Poisson distributions for fly cell cycle lengths priority: medium Non-urgent but important task
#110 opened Nov 19, 2024 by Jannetty
@Jannetty @daniellevahdat
Make parameter that specifies relative critical volume of GMCs to stem cells category: agent Related to the agent subpackages package: potts Related to the potts implementation priority: high Urgent problem that blocks the system until the issue is resolved type: feature Improvement or additions to the code base
#109 opened Nov 19, 2024 by Jannetty
@Jannetty
Make PatchActionConvert reuse old cell processes category: agent Related to the agent subpackages package: patch Related to the patch implementation size: medium Estimated size of issue or PR is medium type: feature Improvement or additions to the code base
#94 opened Nov 13, 2024 by allison-li-1016
2
Race condition on updateExternal() method call in PatchProcessMetabolism category: agent Related to the agent subpackages migration: v2 to v3 Aligning v2 and v3 package: patch Related to the patch implementation priority: high Urgent problem that blocks the system until the issue is resolved type: bug Something isn't working as expected
#92 opened Nov 13, 2024 by allison-li-1016
@allison-li-1016
3
Test fly cell classes package: potts Related to the potts implementation priority: medium Non-urgent but important task type: test Improvement or additions to tests
#91 opened Nov 12, 2024 by Jannetty
@Jannetty
Implement radiation therapy in v3
#88 opened Nov 12, 2024 by jacob-evarts
1
@jacob-evarts
Implement chemotherapy treatment in v3
#87 opened Nov 12, 2024 by jacob-evarts
1
@jacob-evarts
Add GraphSites serializer and deserializer category: env Related to the env subpackages migration: v2 to v3 Aligning v2 and v3 package: patch Related to the patch implementation
#84 opened Oct 28, 2024 by cainja
@cainja
Add environmental logging to V3 category: sim Related to the sim subpackages migration: v2 to v3 Aligning v2 and v3 priority: low Should be fixed if time permits but can be postponed
#79 opened Oct 23, 2024 by allison-li-1016
@allison-li-1016
Implement accuracy and affinity when selecting best location category: agent Related to the agent subpackages migration: v2 to v3 Aligning v2 and v3 package: patch Related to the patch implementation
#78 opened Oct 22, 2024 by cainja
@cainja
Add PRNG seed or failing inputs to output of monkey tests priority: medium Non-urgent but important task type: test Improvement or additions to tests
#77 opened Oct 22, 2024 by cainja
Add unit test for PottsModuleProliferationFlyStem addCell method category: agent Related to the agent subpackages package: potts Related to the potts implementation type: test Improvement or additions to tests
#58 opened Oct 11, 2024 by Jannetty
@Jannetty
Make division counting consistent between implementations category: agent Related to the agent subpackages package: patch Related to the patch implementation package: potts Related to the potts implementation type: feature Improvement or additions to the code base
#55 opened Oct 11, 2024 by jessicasyu
Add support for inserting population by percentage instead of number category: agent Related to the agent subpackages package: patch Related to the patch implementation
#54 opened Oct 10, 2024 by cainja
Add functionality to enable study of asymmetrical cell division in fly neural development package: potts Related to the potts implementation type: feature Improvement or additions to the code base
#50 opened Oct 7, 2024 by Jannetty
@Jannetty
Implement relevant missing features from v2 in v3 migration: v2 to v3 Aligning v2 and v3 package: patch Related to the patch implementation
#47 opened Oct 4, 2024 by jessicasyu
Add visualization for CARCADE category: vis Related to the vis subpackages package: patch Related to the patch implementation
#45 opened Oct 3, 2024 by allison-li-1016
@allison-li-1016
Write unit tests for CARCADE package: patch Related to the patch implementation type: test Improvement or additions to tests
#44 opened Oct 3, 2024 by allison-li-1016
@allison-li-1016
ProTip! Exclude everything labeled bug with -label:bug.