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@bagherilab

Bagheri Lab

Modeling Dynamic Life Systems (MODYLS) Lab

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  1. ARCADE ARCADE Public

    ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments

    Java 9 1

  2. SWING SWING Public

    Sliding Window Inference for Network Generation

    Python 10 12

  3. DUETT DUETT Public

    Detection of Unknown Events with Tunable Thresholds

    R 1 1

  4. DiffExPy DiffExPy Public

    Differential Expression in Python

  5. CARCADE CARCADE Public

    CAR T-cell ARCADE Biological Modeling Framework

    Java 2

Repositories

Showing 10 of 17 repositories
  • ARCADE Public

    ARCADE: Agent-based model of heterogeneous cell populations in dynamic microenvironments

    bagherilab/ARCADE’s past year of commit activity
    Java 9 1 47 6 Updated Dec 13, 2024
  • arcade-collection Public

    Collection of tasks for working with ARCADE

    bagherilab/arcade-collection’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Dec 9, 2024
  • emulation Public
    bagherilab/emulation’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 6, 2024
  • container-collection Public

    Collection of tasks for running containerized models

    bagherilab/container-collection’s past year of commit activity
    Python 3 BSD-3-Clause 0 0 0 Updated Sep 25, 2024
  • emulation_analysis Public
    bagherilab/emulation_analysis’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Mar 14, 2024
  • arcade_modeling_choices Public archive

    Supporting code for doi:10.1371/journal.pcbi.1011917

    bagherilab/arcade_modeling_choices’s past year of commit activity
    HTML 2 0 0 0 Updated Mar 11, 2024
  • parameter-estimation-framework Public
    bagherilab/parameter-estimation-framework’s past year of commit activity
    Python 0 0 0 0 Updated Mar 11, 2024
  • arcade-xml-generator Public
    bagherilab/arcade-xml-generator’s past year of commit activity
    Python 0 1 0 1 Updated Jan 2, 2024
  • CARCADE Public

    CAR T-cell ARCADE Biological Modeling Framework

    bagherilab/CARCADE’s past year of commit activity
    Java 2 GPL-3.0 0 0 0 Updated Jul 8, 2022
  • carcade_mapping_design_space Public

    Scripts to automatically analyze and plot CART ABM data

    bagherilab/carcade_mapping_design_space’s past year of commit activity
    HTML 0 0 0 0 Updated Jun 29, 2022
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