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20 Open 8 Closed
20 Open 8 Closed
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Issues list

[M::main] ERROR during mapping (check files exists and are amino acid fastas)
#29 opened Nov 3, 2024 by xiekunwhy
Transcript/mRNA not harmonized in output
#28 opened Oct 29, 2024 by nikostr
Assertion 0 == retcode failed in parasail_memalign during LiftOn run
#27 opened Oct 27, 2024 by hj-99
Duplicate exons, overlapping CDSs in output
#26 opened Oct 25, 2024 by nikostr
gffutils database build failed with No lines parsed
#25 opened Sep 11, 2024 by yyliang12
1
LiftOff generates better BUSCO scores than LiftOn enhancement New feature or request fixed
#24 opened Aug 20, 2024 by 14zac2
@Kuanhao-Chao
2
Reference annotation database construction get's stuck
#23 opened Aug 13, 2024 by wrengs
LiftOn silently failing due to ID feature
#22 opened Aug 9, 2024 by Glfrey
@Kuanhao-Chao
Python errors when running lifton
#21 opened Aug 5, 2024 by zgb963
3
Installation with pip fails, requiring networkx>=3.3
#19 opened Jul 30, 2024 by 14zac2
@Kuanhao-Chao
can not creating DNA dictionary/protein dictionary from the reference annotation and error in miniprot
#18 opened Jul 26, 2024 by ikkaku1005
@Kuanhao-Chao
2
can not find the installed miniprot installation
#17 opened Jul 23, 2024 by ikkaku1005
@Kuanhao-Chao
1
Provided CHM13 file has incorrect exons bug Something isn't working
#16 opened Jul 18, 2024 by antnguye
@Kuanhao-Chao
race conditions bug Something isn't working feature_request
#14 opened Jul 9, 2024 by kdm9
@Kuanhao-Chao
3
gffutils database build failed with UNIQUE constraint failed: features.id
#12 opened Jul 2, 2024 by yeeus
@Kuanhao-Chao
lifton installation error [pip] bug Something isn't working dependency error
#11 opened Jun 12, 2024 by haydenji0731
@Kuanhao-Chao
parasail_memalign: posix_memalign failed: Cannot allocate memory bug Something isn't working
#9 opened May 30, 2024 by celinehohzm
@Kuanhao-Chao
Weird formatting of column 9 in gff3 lift-over bug Something isn't working feature_request
#8 opened May 30, 2024 by TDDB-limagrain
@Kuanhao-Chao
gffutils error at stage "Populating features" bug Something isn't working
#7 opened May 30, 2024 by jolbi
@Kuanhao-Chao
2
There are no available installation conda packages conda-package
#6 opened May 28, 2024 by hongman2006
@Kuanhao-Chao
5
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