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Transcript/mRNA not harmonized in output #28

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nikostr opened this issue Oct 29, 2024 · 0 comments
Open

Transcript/mRNA not harmonized in output #28

nikostr opened this issue Oct 29, 2024 · 0 comments

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@nikostr
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nikostr commented Oct 29, 2024

In the LiftOn output it seems like output with status=Liftoff or status=LiftOn_chaining_algorithm produces transcript features while output with status=miniprot produces mRNA features. Is there a reason why these are not harmonized in the output?

I'm running the following command

lifton \
    -g $GFF \
    -o pr_090_001.lifton.gff3 \
    -copies \
    --threads 10 \
    $TARGET \
    $REF

using v1.0.5.

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