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WIKI IS STILL UNDER CONSTRUCTION

Table of Contents

1. Introduction
2. Walkthrough
3. Frequently Asked Questions (FAQ)
4. Code and Programs for Related Publications

Introduction

TODO

Walkthrough

This section outlines a walkthrough, or tutorial, of the basic functionality of the JHMR software and how it may be applied to solve common computer assisted surgery workflow tasks, ranging from preoperative planning to intraoperative navigation. All data used in the workflow is either obtained from freely available online sources, such as The Cancer Imaging Archive (TCIA), data derived by processing the data available online, simulating new data, or some combination therein. Links to all of the derived and simulated data files are provided here.

Walkthrough Outline:

1. Obtaining the tools
2. Preoperative planning
   1. DICOM conversion and resampling
   2. Volume cropping
   3. Bone segmentation
   4. Mesh creation
   5. PAO planning and fragment creation
3. Simulated data
   1. Random PAO fragment and femur movements
   2. Volumetric modeling of PAO fragment and femur poses
   3. Insertion of screws and K-wires and volumetric modeling
   4. Fluoroscopy
4. Intraoperative 3D/3D registration
   1. Point cloud to surface registration
5. Intraoperative 2D/3D (fluoroscopy/CT) registration
   1. Single-view pelvis registration
   2. Multiple-view pelvis/femur/PAO fragment registration

Frequently Asked Questions (FAQ)

Help generate this section by asking some questions via the repository issues page, email, or twitter!

1. Are there pre-compiled binaries for Windows/Mac/Linux?
   • Not yet! Once these are available they will be posted on the repository page under releases. Stay tuned.
2. How do I select a specific GPU (or OpenCL device) to use on a system with several GPUs (OpenCL devices) available?
   • TODO: explain.
3. Is it possible to run on a system that does not have a GPU or a less-capable GPU (e.g. a server)?
   • Yes! TODO: explain.
4. My program crashed with some strange OpenCL error message - what happened?
   • TODO: explain.

Code and Programs for Related Publications

TODO: introduce

• TBME
• IPCAI/IJCARS
• PMB
• SPIE MI/CAOS