Skip to content

Issues: kaizhang/SnapATAC2

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

52 Open 244 Closed
52 Open 244 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

bigwig normalization issue
#366 opened Nov 26, 2024 by UCDNJJ
5
Feature Requeset: Add broadpeak support for single-cell cut&tag data?
#365 opened Nov 23, 2024 by yxwucq
2
diff_test get ValueError: Input X contains infinity or a value too large for dtype('float64').
#364 opened Nov 20, 2024 by wkl1990
4
The value of 'Fraction of high-quality fragments overlapping peaks' is greater than 1
#362 opened Nov 18, 2024 by haloudashu
Calculation Method and Significance of "frac_confidently_mapped" ?
#361 opened Nov 18, 2024 by haloudashu
1
Could we provide more parameters for exporting bigwig files? enhancement ✨ New feature or request
#357 opened Oct 21, 2024 by beyondpie
5
Cannot compute joint embedding on RNA and ATAC object
#350 opened Oct 9, 2024 by thecatsmilk
4
Saving raw h5ad files upon running snap.pp.import_data
#344 opened Oct 4, 2024 by joseverdezoto
3
Is there a way generate a coverage plot for DARs? enhancement ✨ New feature or request
#337 opened Sep 6, 2024 by yojetsharma
snap.tl.macs3 error
#336 opened Sep 5, 2024 by HaikuoLi
5
macs3 function not works with multiple dataset
#332 opened Sep 2, 2024 by uqnsarke
4
AnnDataSet can not be converted to AnnData when the X is empty bug 🐛 Something isn't working
#331 opened Aug 30, 2024 by beyondpie
3
Label Transfer Using the SCVI-tools
#326 opened Aug 23, 2024 by aydinbol
1
Downstream analysis tutorial
#319 opened Aug 4, 2024 by GaF123
2
Extracting fragment count matrix
#316 opened Jul 18, 2024 by lf96abc
4
Vignette for downstream analysis tools?
#315 opened Jul 16, 2024 by zrlewis
3
Unexpected behavior in AnnDataSet subset
#310 opened Jun 24, 2024 by mtvector
Specify that all features are used if sample_size is None
#307 opened Jun 4, 2024 by newtonharry
snapatac2.tl.diff_test
#306 opened May 22, 2024 by TingTingShao
2
Accessing and plotting QC metrics after merging to AnnDataSet: more documentation needed documentation 📖 Improvements or additions to documentation
#300 opened Apr 26, 2024 by jeremymsimon
1
Error related to parallelism when running snap.tl.macs3 when running on the cluster documentation 📖 Improvements or additions to documentation
#298 opened Apr 22, 2024 by PauBadiaM
2
snap.tl.macs3
#297 opened Apr 17, 2024 by TingTingShao
1
hard to understand about the description in filter features.
#290 opened Apr 8, 2024 by beyondpie
1
add_cor_scores
#286 opened Apr 2, 2024 by TingTingShao
3
obs_names resets to original barcodes when assigned via AnnDataset
#278 opened Mar 30, 2024 by newtonharry
ProTip! Type g i on any issue or pull request to go back to the issue listing page.