snapatac2.tl.diff_test

[TingTingShao]

Hi,

I generated gene-activity matrix with function make_gene_matrix, could I please ask if the function snapatac2.tl.diff_test can be used to impute the differentially accessible genes?

Thanks,
tingting

[kaizhang]

For gene level analysis, please use scanpy.

[philmar1]

Hello,

Can you explain me what is the difference between diff_test and marker_regions functions ?

Thank you

Philippe