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@fanzhanglab

The Zhang Lab

The Computational Omics and Systems Immunology (COSI) lab

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  1. Zhang_lab_manual Zhang_lab_manual Public

    The Zhang Lab Manual: Lab principles and activities, Handbook for reproducible computational research, Learning resources, Expectations and achievements, etc

    3 2

Repositories

Showing 10 of 14 repositories
  • Zhang_lab_manual Public

    The Zhang Lab Manual: Lab principles and activities, Handbook for reproducible computational research, Learning resources, Expectations and achievements, etc

    fanzhanglab/Zhang_lab_manual’s past year of commit activity
    3 2 0 0 Updated Dec 9, 2024
  • SCRNA-GWAS-Benchmarking Public

    This repository contains the work/pipeline done to prepare GWAS summary statistics, run MAGMA, scGWAS, and scDRS for ...

    fanzhanglab/SCRNA-GWAS-Benchmarking’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Dec 5, 2024
  • STew Public

    Uncover spatially informed variations underlying single-cell spatial transcriptomics with STew.

    fanzhanglab/STew’s past year of commit activity
    HTML 7 MIT 1 0 0 Updated May 31, 2024
  • wall-of-software Public Forked from CU-DBMI/wall-of-software

    A list of tools, packages, workflows, resources, and other software developed at or in collaboration with DBMI

    fanzhanglab/wall-of-software’s past year of commit activity
    HTML 0 8 0 0 Updated Feb 28, 2024
  • singlecell_functions Public

    We implemented and generalized single-cell functions and targeted analytical code for single-cell omics data analysis.

    fanzhanglab/singlecell_functions’s past year of commit activity
    Jupyter Notebook 1 2 0 0 Updated Nov 2, 2023
  • singlecell_preprocessing Public

    Single-cell preprocessing pipelines, such as converting raw bcl files, make fastqs and then generating quantified matrix, etc

    fanzhanglab/singlecell_preprocessing’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Nov 1, 2023
  • AtRiskRA_SingleCell Public

    Source code for the At-Risk RA work

    fanzhanglab/AtRiskRA_SingleCell’s past year of commit activity
    Jupyter Notebook 0 MIT 1 0 0 Updated Jul 7, 2023
  • rvd2_variational_bayesian Public

    Code for our novel Variational Bayesian method for Zhang, Flaherty, BMC Bioinformatics, 2017. This is a Python-based tool for sensitive rare variant detection for NGS data.

    fanzhanglab/rvd2_variational_bayesian’s past year of commit activity
    Python 1 0 0 0 Updated Oct 20, 2022
  • amp_phase1_ra Public

    Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.

    fanzhanglab/amp_phase1_ra’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 2, 2022
  • inflamedtissue_covid19_reference Public

    Code for Zhang, et al, Genome Medicine, 2021. Cross-disease tissue data integration on single-cell transcriptomics

    fanzhanglab/inflamedtissue_covid19_reference’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Jul 2, 2022
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