Single-cell preprocessing pipelines, including:
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10X Genomics Cellranger 10X data preprocessing work flow starting from raw bcl files, make fastqs and then to generate quantified matrix, including:
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⭐ Snakemake file to analyze scRNA-seq
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⭐ Snakemake file to analyze scATAC-seq
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Quantify transcript expression in paired-end scRNA-seq data with kallisto bustools