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Cellfinder workflow CLI input argument with tests #23

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merged 74 commits into from
Oct 13, 2023

make paths in config relative to install_path

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Merged

Cellfinder workflow CLI input argument with tests #23

make paths in config relative to install_path
069516a
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Codecov / codecov/patch succeeded Oct 13, 2023 in 1s

92.56% of diff hit (target 0.00%)

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92.56% of diff hit (target 0.00%)

Annotations

Check warning on line 5 in brainglobe_workflows/__init__.py

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@codecov codecov / codecov/patch

brainglobe_workflows/__init__.py#L5 

Added line #L5 was not covered by tests

Check warning on line 7 in brainglobe_workflows/__init__.py

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@codecov codecov / codecov/patch

brainglobe_workflows/__init__.py#L7 

Added line #L7 was not covered by tests

Check warning on line 195 in brainglobe_workflows/cellfinder/cellfinder_main.py

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@codecov codecov / codecov/patch

brainglobe_workflows/cellfinder/cellfinder_main.py#L195 

Added line #L195 was not covered by tests

Check warning on line 280 in brainglobe_workflows/cellfinder/cellfinder_main.py

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@codecov codecov / codecov/patch

brainglobe_workflows/cellfinder/cellfinder_main.py#L279-L280 

Added lines #L279 - L280 were not covered by tests

Check warning on line 284 in brainglobe_workflows/cellfinder/cellfinder_main.py

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@codecov codecov / codecov/patch

brainglobe_workflows/cellfinder/cellfinder_main.py#L284 

Added line #L284 was not covered by tests

Check warning on line 292 in brainglobe_workflows/cellfinder/cellfinder_main.py

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@codecov codecov / codecov/patch

brainglobe_workflows/cellfinder/cellfinder_main.py#L292 

Added line #L292 was not covered by tests

Check warning on line 376 in brainglobe_workflows/cellfinder/cellfinder_main.py

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@codecov codecov / codecov/patch

brainglobe_workflows/cellfinder/cellfinder_main.py#L375-L376 

Added lines #L375 - L376 were not covered by tests
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