v0.1.2

What's Changed

• compute pixel coords chunck sizes (fix bug with dask array) by @zoccoler in #65
• comply with napari>=0.5.0 .colormap attribute on Labels layer by @zoccoler in #65
• update documentation by @zoccoler in #65

Full Changelog: v0.1.1...v0.1.2

v0.1.1

What's Changed

• Documentation and installation instructions updates by @zoccoler in #62 and #63
• Fix getting current z and t shape from file names by @zoccoler in #64

Full Changelog: v0.1.0...v0.1.1

v0.1.0

What's Changed

• Adding widget to init for workflow access by @sviaro in #42
• Add example workflow by @zoccoler in #44
• Fix dc calculation by @zoccoler in #48
• Patch 0 0 7 by @zoccoler in #53
  • Update installation instructions with mamba
  • Fix .tif reading bug when it does not have shaped_metadata property
  • Make summed intensity image dimensions smaller so that layer is displayed on top of raw flim data layer
• Make plugin compatible with ncp 0_8_0 by @zoccoler in #58
  • Replace labels_select by layer_select in plotter_widget to match napari-clusters-plotter 0.8.0 changes
  • Replace readPTU local function (removed readPTU_FLIM.py) with ptufile library for reading .ptu files (breaking changes)
  • Remove Python 3.8 support to match ptufile library requirements (breaking changes)
  • fix sample data tests to match ptufile library shape outputs
  • Remove 3D sample_data from being shipped along with package, now it downloads this .zip file and decompress it to open it when requested
  • Add progress bars to console when opening stacks
  • Add extra function to read ptu 2d timelapse from single ptu files (read_single_ptu_file_2d_timelapse)
  • Add lossless compression to zarr conversion
• Patch2 0 0 7 by @zoccoler in #59
  • Change synthetic sample data layer names
  • Add options to display tau lines on top of the phasor plot (new feature)
  • Save pixel coordinates to table
  • Handle .sdt files with multiple datasets (open them as different channels, unless they have different shapes, then get only the first array)
  • Include metadata when converting to .zarr files
  • Change phasor layer name and opacity
• Patch 0 1 0 by @zoccoler in #61
  • Increase tests coverage

Full Changelog: 0.0.6...v0.1.0

0.0.6

What's Changed

• zip stack by @zoccoler in #40

Full Changelog: 0.0.5...0.0.6

0.0.5

What's Changed

• Add example stack by @zoccoler in #38
• Avoid always resetting view after clustering also in #38
  Full Changelog: 0.0.4...0.0.5

0.0.4

What's Changed

• feat: extend reader function for sdt file format by @cwetzker in #8
• check file_type string in metadata by @zoccoler in #9
• add laser frequency readout from sdt by @cwetzker in #10
• add summed intensity layer by @zoccoler in #12
• Read stacks including zarr by @zoccoler in #15
• Convert to zarr by @zoccoler in #16
• Update package name by @zoccoler in #25
• update documentation section usage by @cwetzker in #29
• add option in case tif files are single channel (3D) by @zoccoler in #28
• Add binning by @sviaro in #27
• show histogram, log scale by default, always show universal semicircle by @zoccoler in #31
• Add sample data by @zoccoler in #32
• Fix median filter by @zoccoler in #33
• add open phasor plotter command and update command Make FLIM Phasor P… by @zoccoler in #34
• Update phasor plot axes limits and selected layer by @zoccoler in #35

New Contributors

• @cwetzker made their first contribution in #8
• @sviaro made their first contribution in #27

Full Changelog: v0.0.1...0.0.4

v0.0.1: Merge pull request #3 from zoccoler/add_reader_and_plotter

• Added ptu reader capability
• Added Thresholding option
• Added Median Filter option
• Added modified plotter (from napari-cluster-plotter) with universal semicircle
• Automatically call plotter after phasor calculation
• Added tests
• Updated plugin info (readme file, license, authors)
• Added demonstration gif