Merge branch 'main' of https://github.com/zoccoler/napari-flim-phasor…

…-plotter
zoccoler · Aug 18, 2023 · f07d4f7 · f07d4f7
2 parents 3a3d132 + ea0afd2
commit f07d4f7
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Showing 15 changed files with 13 additions and 3 deletions.
diff --git a/setup.cfg b/setup.cfg
@@ -1,6 +1,6 @@
 [metadata]
 name = napari-flim-phasor-plotter
-version = 0.0.5
+version = 0.0.6
 description = A plugin that performs phasor plot from TCSPC FLIM data.
 long_description = file: README.md
 long_description_content_type = text/markdown

diff --git a/src/napari_flim_phasor_plotter/__init__.py b/src/napari_flim_phasor_plotter/__init__.py
@@ -1,4 +1,4 @@
-__version__ = "0.0.5"
+__version__ = "0.0.6"
 
 from ._reader import napari_get_reader
 from ._sample_data import load_seminal_receptacle_image, load_hazelnut_image, load_hazelnut_z_stack, load_lifetime_cat_synthtetic_single_image

diff --git a/src/napari_flim_phasor_plotter/_sample_data.py b/src/napari_flim_phasor_plotter/_sample_data.py
@@ -84,9 +84,19 @@ def load_hazelnut_z_stack():
         Time dimension has length 1.
     """
     import numpy as np
+    import zipfile
+    from pathlib import Path
     from napari_flim_phasor_plotter._reader import read_stack
 
-    folder_path = DATA_ROOT / "hazelnut_FLIM_z_stack"
+    zip_file_path = Path(DATA_ROOT / "hazelnut_FLIM_z_stack.zip")
+    extracted_folder_path = Path(DATA_ROOT / "unzipped_hazelnut_FLIM_z_stack")
+    # Create the target directory if it doesn't exist
+    extracted_folder_path.mkdir(parents=True, exist_ok=True)
+    # Extract the zip file
+    with zipfile.ZipFile(zip_file_path, 'r') as zip_ref:
+        zip_ref.extractall(extracted_folder_path)
+    folder_path = extracted_folder_path / "hazelnut_FLIM_z_stack"
+
     image, metadata = read_stack(folder_path)
     image, metadata = image[0], metadata[0]  # Use first channel, second detector is empty
     return [(image, {'name': 'hazelnut raw FLIM z-stack',