This repository contains all codes used in the paper: “Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach”.
If you find the method useful, please cite:
X. Peng, J. Lee, M. Adamow, C. Maher, M. A. Postow, M. Callahan, K. S. Panageas, R. Shen (2023). “Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach”. [bioRxiv]
You can find the tutorial for the method described in the paper here.
In v1.0, we added source codes for new figures generated during the revision.