source code for the manuscript v1.0

This repository contains all codes used in the paper: “Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach”.

If you find the method useful, please cite:
X. Peng, J. Lee, M. Adamow, C. Maher, M. A. Postow, M. Callahan, K. S. Panageas, R. Shen (2023). “Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach”. [bioRxiv]

You can find the tutorial for the method described in the paper here.

In v1.0, we added source codes for new figures generated during the revision.

source code for the manuscript v0.99

This repository contains all codes used in the paper: “Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach”.
If you find the method useful, please cite:

X. Peng, J. Lee, M. Adamow, C. Maher, M. A. Postow, M. Callahan, K. S. Panageas, R. Shen (2023). “Uncovering the hidden structure of dynamic T cell composition in peripheral blood during cancer immunotherapy: a topic modeling approach”. [bioRxiv]

You can find the tutorial for the method described in the paper here.