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Use higher memory and cores for all FragPipe jobs #1292

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Aug 7, 2024
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Use higher memory and cores for all FragPipe jobs #1292

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13 changes: 2 additions & 11 deletions files/galaxy-test/tpv/tools.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -86,7 +86,7 @@
toolshed.g2.bx.psu.edu/repos/galaxy-australia/hifiasm_meta/hifiasm_meta/.*:
cores: 8
params:
singularity_enabled: True

Check warning on line 89 in files/galaxy-test/tpv/tools.yml

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89:28 [truthy] truthy value should be one of [false, true]

toolshed.g2.bx.psu.edu/repos/rnateam/dewseq/dewseq/.*:
cores: 2
Expand Down Expand Up @@ -817,14 +817,5 @@
- conda

toolshed.g2.bx.psu.edu/repos/galaxyp/fragpipe/fragpipe/.*:
cores: 8
mem: 56
rules:
- id: fragpipe_memory
if: |
parameters = {p.name: p.value for p in job.parameters}
parameters = tool.params_from_strings(parameters, app)
high_memory = parameters.get("high_memory", False)
high_memory
mem: 256
cores: 12
cores: 12
mem: 256
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