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Require 8 cores for FragPipe jobs. #1258

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merged 2 commits into from
Jul 16, 2024
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Require 8 cores for FragPipe jobs. #1258

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Require 8 cores for FragPipe jobs.
reid-wagner Jul 16, 2024
2b3baf7
Allocate 56GB memory for fragpipe.
reid-wagner Jul 16, 2024
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3 changes: 3 additions & 0 deletions files/galaxy/tpv/tools.yml
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Expand Up @@ -1437,3 +1437,6 @@ tools:
scheduling:
require:
- singularity

toolshed.g2.bx.psu.edu/repos/galaxyp/fragpipe/fragpipe/.*:
cores: 8
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By default you only get 4GB

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Okay, I should increase the memory in the pull request too, then. Do you have an estimate for how long jobs requesting 8-cores, 256GB memory would take to queue?

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I don't know. You can try. But I would start with 56 or so!

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@reid-wagner reid-wagner Jul 16, 2024 •
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Okay, let's try that. Can always bump it up later. Pushed a new commit 👍.

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