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[TheiaProk suite] Patch fix: change type of kraken2_report to be string in taxon_table task #297

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Jan 12, 2024
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2 changes: 1 addition & 1 deletion tasks/utilities/task_broad_terra_tools.wdl
Original file line number Diff line number Diff line change
Expand Up @@ -300,7 +300,7 @@ task export_taxon_tables {
Float? midas_secondary_genus_abundance
String? kraken2_version
String? kraken2_docker
File? kraken2_report
String? kraken2_report
File? bakta_gbff
File? bakta_gff3
File? bakta_tsv
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Original file line number Diff line number Diff line change
Expand Up @@ -632,7 +632,7 @@
- path: miniwdl_run/wdl/tasks/taxon_id/task_midas.wdl
md5sum: faacd87946ee3fbdf70f3a15b79ce547
- path: miniwdl_run/wdl/tasks/utilities/task_broad_terra_tools.wdl
md5sum: cc1371406a7e691e704d6d7fff786f48
md5sum: e7a4488aebdabf9ea15a16538d6c835c
- path: miniwdl_run/wdl/workflows/theiaprok/wf_theiaprok_illumina_pe.wdl
md5sum: 4c681a395a318f224d770e423b4c1d75
- path: miniwdl_run/wdl/workflows/utilities/wf_merlin_magic.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -122,7 +122,6 @@
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_archaea_odb10/short_summary.txt
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_bacteria_odb10/busco_sequences/fragmented_busco_sequences/1540940at2.faa
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_bacteria_odb10/busco_sequences/fragmented_busco_sequences/1540940at2.fna
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_bacteria_odb10/busco_sequences/fragmented_busco_sequences/1567535at2.faa
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_bacteria_odb10/busco_sequences/single_copy_busco_sequences/1132353at2.faa
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_bacteria_odb10/busco_sequences/single_copy_busco_sequences/1132353at2.fna
- path: miniwdl_run/call-busco/work/test/auto_lineage/run_bacteria_odb10/busco_sequences/single_copy_busco_sequences/1505038at2.faa
Expand Down Expand Up @@ -598,7 +597,7 @@
- path: miniwdl_run/wdl/tasks/taxon_id/task_midas.wdl
md5sum: faacd87946ee3fbdf70f3a15b79ce547
- path: miniwdl_run/wdl/tasks/utilities/task_broad_terra_tools.wdl
md5sum: cc1371406a7e691e704d6d7fff786f48
md5sum: e7a4488aebdabf9ea15a16538d6c835c
- path: miniwdl_run/wdl/workflows/theiaprok/wf_theiaprok_illumina_se.wdl
md5sum: e7c45852e17b11f6e9ae69cd91d52688
- path: miniwdl_run/wdl/workflows/utilities/wf_merlin_magic.wdl
Expand Down