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adding bed file input #190

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merged 1 commit into from
Sep 20, 2023
Merged

adding bed file input #190

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4 changes: 3 additions & 1 deletion workflows/phylogenetics/wf_snippy_tree.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -31,6 +31,7 @@ workflow snippy_tree_wf {
Int? snippy_core_cpu
Int? snippy_core_disk_size
Int? snippy_core_memory
File? snippy_core_bed

Int? gubbins_disk_size
Int? gubbins_memory
Expand Down Expand Up @@ -61,7 +62,8 @@ workflow snippy_tree_wf {
docker = snippy_core_docker,
cpu = snippy_core_cpu,
disk_size = snippy_core_disk_size,
memory = snippy_core_memory
memory = snippy_core_memory,
bed_file = snippy_core_bed
}
if (use_gubbins) {
call gubbins_task.gubbins {
Expand Down