MRG: update more text to suggest sourmash tax / deprecate sourmash lca
#5439
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: cibuildwheel | |
| on: | |
| push: | |
| branches: [latest] | |
| tags: v* | |
| pull_request: | |
| schedule: | |
| - cron: "0 0 * * *" # daily | |
| jobs: | |
| build_wheels: | |
| name: Build wheels for ${{ matrix.os }}-${{ matrix.arch }} | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| build: [ | |
| linux-x86_64, | |
| macos-x86_64, | |
| macos-arm64, | |
| ] | |
| include: | |
| - build: linux-x86_64 | |
| os: ubuntu-20.04 | |
| arch: x86_64 | |
| macos_target: '' | |
| - build: macos-x86_64 | |
| os: macos-latest | |
| arch: x86_64 | |
| macos_target: 'MACOSX_DEPLOYMENT_TARGET=11.0 CARGO_BUILD_TARGET=x86_64-apple-darwin' | |
| - build: macos-arm64 | |
| os: macos-latest | |
| arch: arm64 | |
| macos_target: 'MACOSX_DEPLOYMENT_TARGET=11.0 CARGO_BUILD_TARGET=aarch64-apple-darwin' | |
| fail-fast: false | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v4 | |
| name: Install Python | |
| with: | |
| python-version: '3.9' | |
| - name: Build wheels | |
| uses: pypa/[email protected] | |
| env: | |
| CIBW_ENVIRONMENT_MACOS: ${{ matrix.macos_target }} | |
| CIBW_ARCHS_LINUX: ${{ matrix.arch }} | |
| CIBW_ARCHS_MACOS: ${{ matrix.arch }} | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: './wheelhouse/sourmash*.whl' | |
| build_wasm: | |
| runs-on: ubuntu-20.04 | |
| env: | |
| PYODIDE_VERSION: "0.23.0" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.11.2" | |
| - run: | | |
| pip install pyodide-build==${PYODIDE_VERSION} "pydantic<2" | |
| pyodide config get emscripten_version # trigger setup | |
| echo EMSCRIPTEN_VERSION=$(pyodide config get emscripten_version) >> $GITHUB_ENV | |
| - uses: mymindstorm/setup-emsdk@v12 | |
| with: | |
| version: ${{ env.EMSCRIPTEN_VERSION }} | |
| - uses: actions-rs/toolchain@v1 | |
| with: | |
| toolchain: stable | |
| target: wasm32-unknown-emscripten | |
| - run: | | |
| export RUSTC_BOOTSTRAP=1 | |
| pyodide build | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| path: './dist/sourmash*.whl' | |
| release: | |
| name: Publish wheels | |
| runs-on: ubuntu-20.04 | |
| if: startsWith(github.ref, 'refs/tags/v') | |
| needs: [build_wheels, build_wasm] | |
| steps: | |
| - name: Fetch wheels from artifacts | |
| id: fetch_artifacts | |
| uses: actions/download-artifact@v3 | |
| with: | |
| path: 'wheels/' | |
| # if it matches a Python release tag, upload to github releases | |
| # TODO: In the future, use the create-release and upload-release-assets actions | |
| - name: Release | |
| uses: fnkr/github-action-ghr@v1 | |
| env: | |
| GHR_PATH: ${{steps.fetch_artifacts.outputs.download-path}}/artifact | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |