Actin compression plots visualization (#26) #18
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| name: CI | |
| on: | |
| push: | |
| branches: | |
| - main | |
| tags: | |
| - "v*" | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: | |
| jobs: | |
| # Check that all files listed in manifest make it into build | |
| check-manifest: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: "3.x" | |
| - run: pip install check-manifest && check-manifest | |
| # Check tests pass on multiple Python and OS combinations | |
| test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9] | |
| os: [ubuntu-latest] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: extractions/setup-just@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install Conda Deps | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| activate-environment: anaconda-client-env | |
| environment-file: ./environment.yml | |
| - name: Install Dependencies | |
| shell: bash -l {0} | |
| run: | | |
| python -m pip install --upgrade pip | |
| just install | |
| - name: Run Tests | |
| shell: bash -l {0} | |
| run: just test | |
| - name: Upload Codecov | |
| uses: codecov/codecov-action@v3 | |
| # Check linting, formating, types, etc. | |
| lint: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - uses: extractions/setup-just@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install .[lint] | |
| - name: Lint | |
| run: just lint | |
| # Publish to PyPI if test, lint, and manifest checks passed | |
| publish: | |
| if: "success() && startsWith(github.ref, 'refs/tags/')" | |
| needs: [check-manifest, test, lint] | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| fetch-depth: 0 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: 3.9 | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install build wheel | |
| - name: Build Package | |
| run: | | |
| python -m build | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: aicspypi | |
| password: ${{ secrets.PYPI_TOKEN }} |