Tools for building computational biology models and example models from the Simularium project. Includes coarse-grained monomer ReaDDy models for actin, microtubules, and kinesin.
See examples/README.md to run example actin, microtubules, or kinesin models either locally or on AWS with Docker.
Development Head: pip install git+https://github.com/simularium/simularium_readdy_models.git
(conda is currently required to install readdy.)
- Create a virtual environment with conda-specific dependencies:
conda env create -f environment.yml - Activate the environment:
conda activate readdy_models - Install remaining dependencies:
just install
See CONTRIBUTING.md for information related to developing the code.