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@secrierlab

Secrier Lab @ UCL Genetics Institute

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  1. HistoMIL HistoMIL Public

    A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.

    Python 28 7

  2. SpottedPy SpottedPy Public

    Hotspot cluster distance analysis in spatial transcriptomic data

    Jupyter Notebook 12

  3. EMT EMT Public

    This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.

    R 10 1

  4. tumourMassDormancy tumourMassDormancy Public

    This repository contains the code developed for the analysis of tumour mass dormancy, immunological and angiogenic dormancy across cancers from the Cancer Genome Atlas (TCGA).

    R 5 1

  5. CancerG0Arrest CancerG0Arrest Public

    Evaluation of cell cycle arrest from transcriptomics data.

    R 4 1

  6. Mutational-Signatures-OAC Mutational-Signatures-OAC Public

    Analysis of mutational signature dynamics across stages of oesophageal adenocarcinoma development.

    R 3

Repositories

Showing 10 of 14 repositories
  • G0-LM Public

    A foundation model to classify G0, slow and fast cycling states in single cell RNA-seq cancer data. This model has currently been trained on breast cancer only.

    secrierlab/G0-LM’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Dec 9, 2024
  • SpottedPy Public

    Hotspot cluster distance analysis in spatial transcriptomic data

    secrierlab/SpottedPy’s past year of commit activity
    Jupyter Notebook 12 GPL-3.0 0 1 0 Updated Dec 3, 2024
  • secrierlab.github.io Public

    The Secrier lab website.

    secrierlab/secrierlab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Oct 23, 2024
  • EMT-LM Public
    secrierlab/EMT-LM’s past year of commit activity
    Jupyter Notebook 1 GPL-3.0 0 0 0 Updated Sep 26, 2024
  • CancerG0Arrest Public

    Evaluation of cell cycle arrest from transcriptomics data.

    secrierlab/CancerG0Arrest’s past year of commit activity
    R 4 GPL-3.0 1 1 0 Updated Jun 26, 2024
  • HistoMIL Public

    A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.

    secrierlab/HistoMIL’s past year of commit activity
    Python 28 GPL-3.0 7 0 0 Updated May 21, 2024
  • MultiscaleHRD Public
    secrierlab/MultiscaleHRD’s past year of commit activity
    R 1 GPL-3.0 0 1 0 Updated Feb 23, 2024
  • IDH_mutant_glioma_subtypes Public
    secrierlab/IDH_mutant_glioma_subtypes’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Feb 19, 2024
  • HNSCC-immunity-landscape Public
    secrierlab/HNSCC-immunity-landscape’s past year of commit activity
    R 0 GPL-3.0 0 0 0 Updated Jul 3, 2023
  • Mutational-Signatures-OAC Public

    Analysis of mutational signature dynamics across stages of oesophageal adenocarcinoma development.

    secrierlab/Mutational-Signatures-OAC’s past year of commit activity
    R 3 GPL-3.0 0 0 0 Updated Jun 21, 2023
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