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@secrierlab Secrier Lab @ UCL Genetics Institute

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    14 repositories

    • G0-LM

      Public
      A foundation model to classify G0, slow and fast cycling states in single cell RNA-seq cancer data. This model has currently been trained on breast cancer only.
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Dec 9, 2024Dec 9, 2024

    • SpottedPy

      Public
      Hotspot cluster distance analysis in spatial transcriptomic data
      clusterspatialtranscriptomicshotspotsdistanceshotspots-analysis
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•12•1•0•Updated Dec 3, 2024Dec 3, 2024

    • secrierlab.github.io

      Public
      The Secrier lab website.
      HTML
      •0•0•0•0•Updated Oct 23, 2024Oct 23, 2024

    • EMT-LM

      Public
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •0•1•0•0•Updated Sep 26, 2024Sep 26, 2024

    • CancerG0Arrest

      Public
      Evaluation of cell cycle arrest from transcriptomics data.
      cancerquiescencemulti-omicsdormancy
      R
      •
      GNU General Public License v3.0
      •1•4•1•0•Updated Jun 26, 2024Jun 26, 2024

    • HistoMIL

      Public
      A Python package for handling histopathology whole-slide images using multiple instance learning (MIL) techniques.
      deep-learninghistopathology-image-analysis
      Python
      •
      GNU General Public License v3.0
      •7•28•0•0•Updated May 21, 2024May 21, 2024

    • MultiscaleHRD

      Public
      R
      •
      GNU General Public License v3.0
      •0•1•1•0•Updated Feb 23, 2024Feb 23, 2024

    • IDH_mutant_glioma_subtypes

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Feb 19, 2024Feb 19, 2024

    • HNSCC-immunity-landscape

      Public
      R
      •
      GNU General Public License v3.0
      •0•0•0•0•Updated Jul 3, 2023Jul 3, 2023

    • Mutational-Signatures-OAC

      Public
      Analysis of mutational signature dynamics across stages of oesophageal adenocarcinoma development.
      R
      •
      GNU General Public License v3.0
      •0•3•0•0•Updated Jun 21, 2023Jun 21, 2023

    • MouseSARSCov2Infection

      Public
      R
      •0•0•0•0•Updated Mar 9, 2023Mar 9, 2023

    • EMT

      Public
      This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.
      cancerbulksingle-cellemt
      R
      •1•10•1•0•Updated Jan 24, 2023Jan 24, 2023

    • TumourHistologyDL

      Public
      Characteraising the immunological landscape and spatial architecture of colon cancer tissue
      Jupyter Notebook
      •
      MIT License
      •0•2•1•0•Updated Feb 25, 2022Feb 25, 2022

    • tumourMassDormancy

      Public
      This repository contains the code developed for the analysis of tumour mass dormancy, immunological and angiogenic dormancy across cancers from the Cancer Genome Atlas (TCGA).
      cancerdormancybulk-sequencing
      R
      •
      GNU General Public License v3.0
      •1•5•0•0•Updated Apr 20, 2021Apr 20, 2021