Update bug two #19
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Update bug two #19
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jvfe
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Nov 29, 2024
* wip: Add bug two * refact: Try defaulting to a dict * fix: Dont allow remote to be unbound * refact: Check if not equal to component type * refact: Re-add isinstance dict * fix: Remove mention of component_name * refact: Add special case for strings following dicts * test: Try removing branch from test case * refact: Remove isinstance for str * refact: Use dict only with get_comps out * Revert "refact: Use dict only with get_comps out" This reverts commit 7ebc6dc. * refact: Check if content has subwfs * refact: Always set current remote * refact: Check sha before resetting current_repo * refact: Do the negative test * refact: Use another variable for remote * refact: Simplify check * refact: Expand check once again * refact: Roll back to previous check * fix: self.sha must not be none to reset to none * Revert "fix: self.sha must not be none to reset to none" This reverts commit 65aa1c4. * Try removing the section entirely * refact: Try moving check to reset * refact: Remove unnecessary current_sha * refact: Change check in get_comps * refact: Set git remote beforehand * refact: Change indent so previous check is the same * refact: Remove current repo check * Revert "refact: Remove current repo check" This reverts commit a956e04. * refact: Try using name list * fix: Remove break in loop * refactor: Always set current_repo * fix: Check if name is in updated * refactor: Remove unused sections and logs
jvfe
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Dec 4, 2024
* test: Add test for installing a module already installed from different org * fix: Remove unnecessary install command * test: Add test for updating cross-org subwfs * fix: Change hash to sha * fix: Add remote url * refact: Create shared instance of subworkflowinstall * test: to keep same named cross mods post subwf rm * refact: Don't use sha for the alternative repo * fix: Add else to sha check * fix: Move check to cross-org stuff * refact: Reverse check order * test: Add update test (#19) * wip: Add bug two * refact: Try defaulting to a dict * fix: Dont allow remote to be unbound * refact: Check if not equal to component type * refact: Re-add isinstance dict * fix: Remove mention of component_name * refact: Add special case for strings following dicts * test: Try removing branch from test case * refact: Remove isinstance for str * refact: Use dict only with get_comps out * Revert "refact: Use dict only with get_comps out" This reverts commit 7ebc6dc. * refact: Check if content has subwfs * refact: Always set current remote * refact: Check sha before resetting current_repo * refact: Do the negative test * refact: Use another variable for remote * refact: Simplify check * refact: Expand check once again * refact: Roll back to previous check * fix: self.sha must not be none to reset to none * Revert "fix: self.sha must not be none to reset to none" This reverts commit 65aa1c4. * Try removing the section entirely * refact: Try moving check to reset * refact: Remove unnecessary current_sha * refact: Change check in get_comps * refact: Set git remote beforehand * refact: Change indent so previous check is the same * refact: Remove current repo check * Revert "refact: Remove current repo check" This reverts commit a956e04. * refact: Try using name list * fix: Remove break in loop * refactor: Always set current_repo * fix: Check if name is in updated * refactor: Remove unused sections and logs * test: Use the same subworkflow in all test cases get_genome_annotation is not necessary, given we're using another subworkflow for the other tests * refact: Update cross_org remote to nf-core-test * fix: Change remote name in install test * refact: Remove none check from all_subworkflows Co-authored-by: Matthieu Muffato <[email protected]> * docs: Add hash comment * refact: Use mod/subwf_name in both sections * test: Check updated subwf content --------- Co-authored-by: Matthieu Muffato <[email protected]>
muffato
added this to the Enable subworkflows with cross-organization modules milestone
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CHANGELOG.mdis updateddocsis updated