Update to use the sorted bam file for generate_samplesheet

sanger-tol · Jun 27, 2024 · 5f6d384 · 5f6d384
1 parent b651966
commit 5f6d384
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/ascc.nf b/workflows/ascc.nf
@@ -314,7 +314,7 @@ workflow ASCC {
     //
     // SUBWORKFLOW: CALCULATE AVERAGE READ COVERAGE
     //
-    if ( workflow_steps.contains('coverage') || workflow_steps.contains('ALL') ) {
+    if ( workflow_steps.contains('coverage') || workflow_steps.contains('busco_btk') || workflow_steps.contains('ALL') ) {
         RUN_READ_COVERAGE (
             YAML_INPUT.out.reference_tuple,
             YAML_INPUT.out.assembly_path,