Update to use the sorted bam file for generate_samplesheet

sanger-tol · Jun 27, 2024 · b651966 · b651966
1 parent 1fadcc5
commit b651966
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflows/ascc.nf b/workflows/ascc.nf
@@ -471,7 +471,7 @@ workflow ASCC {
     if ( workflow_steps.contains('busco_btk') && workflow_steps.contains("autofilter") && btk_bool.run_btk == "ABNORMAL" || workflow_steps.contains('ALL') ) {
 
         GENERATE_SAMPLESHEET (
-            bam_ch
+            ch_bam
         )
         //ch_versions              = ch_versions.mix(GENERATE_SAMPLESHEET.out.versions)