Skip to content

Issues: pepkit/looper

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

31 Open 333 Closed
31 Open 333 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Running a looper pipeline ad hoc enhancement help wanted question UX
#538 opened Nov 26, 2024 by nleroy917
2
looper report happily makes an empty report bug
#537 opened Nov 12, 2024 by nsheff
@donaldcampbelljr
looper table appears to re-create the item once per sample, and makes empty table bug
#536 opened Nov 12, 2024 by nsheff
@donaldcampbelljr
3
looper report makes files with spaces in names bug
#535 opened Nov 12, 2024 by nsheff
@donaldcampbelljr
looper report file location parameter missing
#534 opened Nov 12, 2024 by nsheff
@donaldcampbelljr
1
looper report messaging
#533 opened Oct 17, 2024 by nsheff
@donaldcampbelljr
portable report zip missing extension docs
#532 opened Oct 17, 2024 by nsheff
@donaldcampbelljr
Rerun documentation docs
#531 opened Oct 10, 2024 by nsheff
Reduce verbosity of refgenie tag plugin? likely-solved
#529 opened Oct 9, 2024 by nsheff
2
Misleading error message if pipeline_interface path does not exist
#528 opened Oct 9, 2024 by nsheff
divvy dev suggestions enhancement
#527 opened Oct 9, 2024 by nsheff
@donaldcampbelljr
sizing keyword is not working correctly bug
#524 opened Sep 19, 2024 by nsheff
1
looper is not validating inputs correctly bug
#523 opened Sep 19, 2024 by nsheff
3
looper report runs pipestat summarize multiple times bug
#522 opened Sep 10, 2024 by donaldcampbelljr
divvy init gives error when initializing new default likely-solved
#520 opened Aug 27, 2024 by donaldcampbelljr
looper config should allow for pipestat pephub path. likely-solved
#519 opened Aug 26, 2024 by donaldcampbelljr
1
looper cli is not taking priority if cli modifiers are used in looper config likely-solved
#518 opened Aug 22, 2024 by donaldcampbelljr v2.0.0
3
Error: looper requires JWT for retrieving public PEP from PEPhub bug
#516 opened Aug 22, 2024 by nsheff v2.0.0
@khoroshevskyi
5
Improve error message for bad looper config likely-solved messaging
#515 opened Aug 22, 2024 by nsheff v2.0.0
@donaldcampbelljr
6
Make suggested changes to looper init likely-solved
#514 opened Aug 20, 2024 by donaldcampbelljr
4 tasks done
v2.0.0
4
divvy list error bug likely-solved
#512 opened Aug 19, 2024 by nsheff v2.0.0
1
Remove printed dict at looper finish likely-solved
#511 opened Aug 19, 2024 by donaldcampbelljr v2.0.0
1
how do to parallel-process files with looper locally -- lump them together, this will group several commands in one like:
#498 opened Jun 5, 2024 by donaldcampbelljr
1
For Looper 2.0, we will consolidate sample and project level pipeline interfaces under a single interface. likely-solved
#493 opened May 24, 2024 by donaldcampbelljr v2.0.0
Speeding up looper CLI use enhancement
#476 opened Mar 12, 2024 by nsheff v2.1.0
@donaldcampbelljr
4
ProTip! no:milestone will show everything without a milestone.