Merge pull request easybuilders#21913 from PhoenixEmik/20241126232443…

…_new_pr_picard330

{bio}[system/system] picard v3.3.0 w/ Java 17

easybuild/easyconfigs/p/picard/picard-3.3.0-Java-17.eb

@@ -0,0 +1,62 @@
+##
+# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild
+#
+# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia
+# Homepage: https://www.adelaide.edu.au/phoenix/
+#
+# Copyright::   adelaide.edu.au/phoenix
+# Authors::	Robert Qiao <[email protected]>, Exe Escobedo <[email protected]>
+# License::	MIT
+#
+# 2.10.1:
+# Adam Huffman
+# The Francis Crick Institute
+# 2.18.11:
+# Jonas Demeulemeester
+# The Francis Crick Institute
+# 2.21.1
+# Pavel Grochal (INUITS)
+# 2.25.1
+# J. Sassmannshausen (GSTT)
+# 2.25.5
+# Erica Bianco (HPCNow!)
+# 2.26.10
+# Christoph Siegert (Leipzig University)
+# 3.0.0
+# Graham Derryberry (UTK)
+# 3.3.0
+# Emik Lin (HKUMed CPOS)
+##
+
+easyblock = 'JAR'
+
+name = 'picard'
+version = '3.3.0'
+versionsuffix = '-Java-%(javaver)s'
+
+homepage = 'https://broadinstitute.github.io/picard/'
+description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format."""
+
+toolchain = SYSTEM
+
+source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s']
+sources = [{
+    'filename': '%(name)s-%(version)s.jar',
+    'download_filename': '%(name)s.jar',
+}]
+checksums = ['58819a7660646b74b34e282f5d4d21c8dbaea22ddeff96e3258755dafa0f86dc']
+
+postinstallcmds = ["mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar"]
+
+dependencies = [('Java', '17')]
+
+sanity_check_commands = ['java -jar $EBROOTPICARD/picard.jar 2>&1 | grep USAGE']
+
+sanity_check_paths = {
+    'files': ['picard.jar'],
+    'dirs': [],
+}
+
+modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar"
+
+moduleclass = 'bio'