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adding easyconfigs: picard-3.3.0-Java-17.eb
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## | ||
# This is an easyconfig file for EasyBuild, see https://github.com/easybuilders/easybuild | ||
# | ||
# This is a contribution from Phoenix HPC Service, The University of Adelaide, Australia | ||
# Homepage: https://www.adelaide.edu.au/phoenix/ | ||
# | ||
# Copyright:: adelaide.edu.au/phoenix | ||
# Authors:: Robert Qiao <[email protected]>, Exe Escobedo <[email protected]> | ||
# License:: MIT | ||
# | ||
# 2.10.1: | ||
# Adam Huffman | ||
# The Francis Crick Institute | ||
# 2.18.11: | ||
# Jonas Demeulemeester | ||
# The Francis Crick Institute | ||
# 2.21.1 | ||
# Pavel Grochal (INUITS) | ||
# 2.25.1 | ||
# J. Sassmannshausen (GSTT) | ||
# 2.25.5 | ||
# Erica Bianco (HPCNow!) | ||
# 2.26.10 | ||
# Christoph Siegert (Leipzig University) | ||
# 3.0.0 | ||
# Graham Derryberry (UTK) | ||
# 3.3.0 | ||
# Emik Lin (HKUMed CPOS) | ||
## | ||
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easyblock = 'JAR' | ||
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name = 'picard' | ||
version = '3.3.0' | ||
versionsuffix = '-Java-%(javaver)s' | ||
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homepage = 'https://broadinstitute.github.io/picard/' | ||
description = """A set of tools (in Java) for working with next generation sequencing data in the BAM format.""" | ||
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toolchain = SYSTEM | ||
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source_urls = ['https://github.com/broadinstitute/picard/releases/download/%(version)s'] | ||
sources = [{ | ||
'filename': '%(name)s-%(version)s.jar', | ||
'download_filename': '%(name)s.jar', | ||
}] | ||
checksums = ['58819a7660646b74b34e282f5d4d21c8dbaea22ddeff96e3258755dafa0f86dc'] | ||
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postinstallcmds = ["mv %(installdir)s/%(name)s-%(version)s.jar %(installdir)s/%(name)s.jar"] | ||
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dependencies = [('Java', '17')] | ||
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sanity_check_commands = ['java -jar $EBROOTPICARD/picard.jar 2>&1 | grep USAGE'] | ||
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sanity_check_paths = { | ||
'files': ['picard.jar'], | ||
'dirs': [], | ||
} | ||
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modloadmsg = "To execute picard run: java -jar $EBROOTPICARD/%(name)s.jar" | ||
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moduleclass = 'bio' |