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22 Open 33 Closed
22 Open 33 Closed
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Issues list

Convert units enhancement New feature or request intermediate
#57 opened Nov 14, 2024 by lambdamoses
1
Conversion of sfe Object to AnnData
#56 opened Nov 14, 2024 by aasingh2
9
New implementation of affine transformations of SFE objects advanced enhancement New feature or request
#54 opened Oct 25, 2024 by lambdamoses
1
make readSpatialxe output from nf-core spatialxe advanced enhancement New feature or request
#53 opened Oct 22, 2024 by alikhuseynov
make readProseg from proseg segmentation output enhancement New feature or request intermediate
#52 opened Oct 11, 2024 by alikhuseynov
Optimize VisiumHD loading intermediate optimization refactor
#51 opened Oct 6, 2024 by alikhuseynov
1
Capacity Error with readXenium() Function and Issues Combining Samples Using cbind()
#48 opened Aug 5, 2024 by aasingh2
7
Could you add a function for plotting a reverse y-axis like GIOTTO? mirror or mirrorImg is not enough. Maybe a Mirror_Y_axis function To facilitate drawing and bridge the gap between different softwares
#47 opened Jul 11, 2024 by huiyijiangling
1
add readAkoya enhancement New feature or request intermediate
#42 opened Mar 25, 2024 by alikhuseynov
Vignette on registering adjacent sections documentation Improvements or additions to documentation enhancement New feature or request intermediate
#38 opened Mar 16, 2024 by lambdamoses
@lambdamoses
Better support the complexity in sample relations advanced enhancement New feature or request
#33 opened Mar 3, 2024 by lambdamoses
@lambdamoses
4
Use geometry to decide which cells should have sample_id changed advanced enhancement New feature or request
#31 opened Feb 21, 2024 by lambdamoses
@lambdamoses
Change sample_id with list of cell IDs enhancement New feature or request intermediate
#30 opened Feb 21, 2024 by lambdamoses
@lambdamoses
Merge method for SFE
#29 opened Feb 21, 2024 by lambdamoses
3
Get and set the primary colGeometry beginner enhancement New feature or request
#24 opened Feb 13, 2024 by lambdamoses
2
Allow more than sf class in the Geometries advanced enhancement New feature or request
#21 opened Feb 5, 2024 by lambdamoses
@lambdamoses
Supporting 3D cell segmentation advanced enhancement New feature or request
#20 opened Feb 5, 2024 by lambdamoses
Add readMolKart Resolve Bioscience enhancement New feature or request intermediate
#18 opened Dec 7, 2023 by alikhuseynov
Add readSeeker enhancement New feature or request intermediate
#11 opened Aug 25, 2023 by lambdamoses
Add vignette on raster vector interaction documentation Improvements or additions to documentation
#9 opened Aug 17, 2023 by lambdamoses
tidySFE
#4 opened Aug 7, 2023 by lambdamoses
convert Seurat to SFE and back advanced documentation Improvements or additions to documentation enhancement New feature or request
#3 opened Jul 25, 2023 by alikhuseynov
@alikhuseynov
15
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