New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

make `readSpatialxe` output from nf-core `spatialxe` #53

Open

alikhuseynov opened this issue Oct 22, 2024 · 0 comments

Labels

advanced enhancement

Collaborator

alikhuseynov commented Oct 22, 2024 •

edited

Loading

nf-core pipeline on 10X Xenium data
some overview here:

https://summit.nextflow.io/2024/barcelona/posters/10-31--spatialxe---standard-processing/
https://github.com/heylf/spatialxe
and on nfcore.slack.com #spatialxe, most recent discussions are there

needed:

specifics on output that can be used
toy dataset

alikhuseynov added enhancement advanced labels

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment