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    20 repositories

    • Relion

      Public
      Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)
      Python
      •
      MIT License
      •11•25•0•0•Updated Jan 28, 2020Jan 28, 2020

    • Motion-correction

      Public
      Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories
      C++
      •
      MIT License
      •7•11•2•0•Updated Mar 28, 2017Mar 28, 2017

    • myami-3.2-freeHand-v1.0

      Public
      Python scripts and xml file to convert MSI-Tomography into a Free Hand test collecting application for cryo-electron microscopy in Leginon
      MIT License
      •1•0•0•0•Updated May 25, 2016May 25, 2016

    • SPIDER

      Public
      Scripts for using SPIDER to analyze images of single particles from electron microscopy images
      Python
      •0•2•0•0•Updated May 13, 2016May 13, 2016

    • ISAC

      Public
      Repository with python wrapper for running ISAC (Iterative stable alignment and clustering) for analyzing of cryo-electron microscopy data
      Python
      •
      MIT License
      •0•1•0•0•Updated May 5, 2016May 5, 2016

    • FREALIGN

      Public
      Scripts for using FREALIGN for structure refinement
      Python
      •1•2•0•0•Updated Apr 9, 2016Apr 9, 2016

    • Appion

      Public
      Useful scripts for interacting with Appion
      Python
      •0•1•0•0•Updated Apr 9, 2016Apr 9, 2016

    • myami-3.2-freeHand

      Public
      Development of myami-3.2 branch to include free-hand test node within leginon's MSI-T application
      Python
      •
      MIT License
      •2•0•0•0•Updated Apr 8, 2016Apr 8, 2016

    • General_routines

      Public
      Repository for general scripts to interact with single particle cryo-EM data.
      Python
      •
      MIT License
      •1•0•0•0•Updated Nov 27, 2015Nov 27, 2015

    • AutoAlign

      Public
      2D reference-free analysis of electron microscopy data using a topology representing network
      C++
      •0•0•0•0•Updated Nov 25, 2015Nov 25, 2015

    • Signature

      Public
      Scripts to run signature through the command line to pick single particles for negative stain and cryo-electron microscopy (cryo-EM)
      Python
      •
      MIT License
      •2•1•0•0•Updated Oct 16, 2015Oct 16, 2015

    • Tiltpicker_import_patched

      Public
      Scripts to run a patched version of TiltPicker-2.0b13 that allows importing of particle picks
      Python
      •0•1•0•0•Updated Jul 19, 2015Jul 19, 2015

    • RCT-and-OTR-analysis

      Public
      Scripts for creating RCT and OTR models
      MIT License
      •0•0•0•0•Updated Dec 7, 2014Dec 7, 2014

    • Multislice

      Public
      Scripts for calculating simulated transmission electron microscopy images based upon PDB files
      C
      •3•4•0•0•Updated Nov 13, 2014Nov 13, 2014

    • EMAN2

      Public
      Scripts for electron microscopy image analysis using EMAN2/Sparx
      Python
      •
      MIT License
      •1•4•0•0•Updated Aug 14, 2014Aug 14, 2014

    • FreeHand

      Public
      Scripts for implementing the free-hand test on electron microscopy single particles
      Python
      •
      MIT License
      •1•1•0•0•Updated Aug 14, 2014Aug 14, 2014

    • FindDQE

      Public
      Scripts to run 'finddqe.exe' from Ruskin et al. Journal of Structural Biology 2013
      Fortran
      •
      MIT License
      •0•1•0•0•Updated Aug 14, 2014Aug 14, 2014

    • XMIPP

      Public
      Scripts for electron microscopy image analysis using XMIPP
      Python
      •
      MIT License
      •0•2•1•0•Updated Aug 14, 2014Aug 14, 2014

    • Phase_randomisation

      Public
      Scripts for randomizing the phases of electron microscopy images based on Chen et al. Ultramicroscopy
      Fortran
      •
      MIT License
      •0•1•0•0•Updated Aug 14, 2014Aug 14, 2014

    • EMAN2recon

      Public
      Scripts for running EMAN2/Sparx refinement written by Pawel Penczek
      Python
      •0•1•0•0•Updated Jan 10, 2014Jan 10, 2014