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@leschzinerlab

Leschziner lab

Using cryo-electron microscopy (cryo-EM) to determine new and exciting macromolecular structures.

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  1. Relion Relion Public

    Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)

    Python 25 11

  2. Motion-correction Motion-correction Public

    Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories

    C++ 11 7

  3. EMAN2 EMAN2 Public

    Scripts for electron microscopy image analysis using EMAN2/Sparx

    Python 4 1

  4. Multislice Multislice Public

    Scripts for calculating simulated transmission electron microscopy images based upon PDB files

    C 4 3

  5. SPIDER SPIDER Public

    Scripts for using SPIDER to analyze images of single particles from electron microscopy images

    Python 2

  6. XMIPP XMIPP Public

    Scripts for electron microscopy image analysis using XMIPP

    Python 2

Repositories

Showing 10 of 20 repositories
  • Relion Public

    Scripts for using the Relion package for single particle cryo-electron microscopy (cryo-EM)

    leschzinerlab/Relion’s past year of commit activity
    Python 25 MIT 11 0 0 Updated Jan 28, 2020
  • Motion-correction Public

    Scripts for aligning cryo-electron microscopy direct electron detector movies on whole movies or individual particle trajectories

    leschzinerlab/Motion-correction’s past year of commit activity
    C++ 11 MIT 7 2 0 Updated Mar 28, 2017
  • myami-3.2-freeHand-v1.0 Public

    Python scripts and xml file to convert MSI-Tomography into a Free Hand test collecting application for cryo-electron microscopy in Leginon

    leschzinerlab/myami-3.2-freeHand-v1.0’s past year of commit activity
    0 MIT 1 0 0 Updated May 25, 2016
  • SPIDER Public

    Scripts for using SPIDER to analyze images of single particles from electron microscopy images

    leschzinerlab/SPIDER’s past year of commit activity
    Python 2 0 0 0 Updated May 13, 2016
  • ISAC Public

    Repository with python wrapper for running ISAC (Iterative stable alignment and clustering) for analyzing of cryo-electron microscopy data

    leschzinerlab/ISAC’s past year of commit activity
    Python 1 MIT 0 0 0 Updated May 5, 2016
  • FREALIGN Public

    Scripts for using FREALIGN for structure refinement

    leschzinerlab/FREALIGN’s past year of commit activity
    Python 2 1 0 0 Updated Apr 9, 2016
  • Appion Public

    Useful scripts for interacting with Appion

    leschzinerlab/Appion’s past year of commit activity
    Python 1 0 0 0 Updated Apr 9, 2016
  • myami-3.2-freeHand Public

    Development of myami-3.2 branch to include free-hand test node within leginon's MSI-T application

    leschzinerlab/myami-3.2-freeHand’s past year of commit activity
    Python 0 MIT 2 0 0 Updated Apr 8, 2016
  • General_routines Public

    Repository for general scripts to interact with single particle cryo-EM data.

    leschzinerlab/General_routines’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Nov 27, 2015
  • AutoAlign Public

    2D reference-free analysis of electron microscopy data using a topology representing network

    leschzinerlab/AutoAlign’s past year of commit activity
    C++ 0 0 0 0 Updated Nov 25, 2015
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