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@chiulab Chiu Lab

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    6 repositories

    • SARS-CoV-2_Northern_California_genomic_surveillance

      Public
      Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al.) https://doi.org/10.1101/2020.03.27.20044925
      1•0•0•0•Updated Apr 28, 2020Apr 28, 2020

    • MSSPE-design

      Public
      Perl
      •
      Other
      •2•12•7•0•Updated Jan 29, 2020Jan 29, 2020

    • SURPIrt-dist

      Public
      Perl
      •
      Other
      •6•9•1•0•Updated Dec 7, 2019Dec 7, 2019

    • SURPI-plus-dist

      Public
      This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical metagenomic sequence data. Please download SURPI+ software from here.
      Shell
      •21•40•0•0•Updated Nov 20, 2019Nov 20, 2019

    • surpi

      Public
      SURPI
      Shell
      •
      Other
      •47•83•20•5•Updated May 10, 2016May 10, 2016

    • metaPORE

      Public
      MetaPORE – Chiu Laboratory, University of California, San Francisco
      Shell
      •
      Other
      •4•12•0•0•Updated Nov 4, 2015Nov 4, 2015