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1. surpi surpi Public

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2. SURPI-plus-dist SURPI-plus-dist Public

   This repository houses the code to run SURPI+, a rapid computational pipeline for comprehensive identification of pathogens from clinical metagenomic sequence data. Please download SURPI+ software …

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3. metaPORE metaPORE Public

   MetaPORE – Chiu Laboratory, University of California, San Francisco

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4. MSSPE-design MSSPE-design Public

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5. SURPIrt-dist SURPIrt-dist Public

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6. SARS-CoV-2_Northern_California_genomic_surveillance SARS-CoV-2_Northern_California_genomic_surveillance Public

   Forked from laduplessis/SARS-CoV-2_Northern_California_genomic_surveillance

   Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al.) https://doi.org/10.1101/2020.03.27.20044925