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modPhred v1.0b

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@lpryszcz lpryszcz released this 08 Jul 09:13
· 24 commits to main since this release

This version corresponds to revised version of the manuscript.

The changes include:

  • added support for guppy ver >5 (via pyguppyclient v0.1.0)
  • FastQ and FastM files are now stored in output/reads
  • base qualities are optionally stored in BAM under OQ tag if -s / --storeQuals is specified
  • intermediary files (FastQ/M) are removed if --cleanup is specified
  • additional messages notifying that some intermediary files exist
  • more extensive documentation
  • Docker files and images for guppy 3.6.1 and 5.0.11