fetch all tools bot - step fetch

results/repositories02.list_tools.json

@@ -6308,7 +6308,7 @@
         "EDAM topic": [
             "Sequence analysis"
         ],
-        "Status": "To update",
+        "Status": "Up-to-date",
         "Source": "http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/",
         "ToolShed categories": [
             "Sequence Analysis"
@@ -6319,7 +6319,7 @@
         "Galaxy wrapper parsed folder": "https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan",
         "Galaxy wrapper version": "1.6",
         "Conda id": "pfam_scan",
-        "Conda version": null
+        "Conda version": "1.6"
     },
     {
         "Galaxy wrapper id": "pg_tools",

results/repositories02.list_tools.tsv

@@ -212,7 +212,7 @@ partialr_square			partialRsq	Compute partial R square								To update		Statisti
 peakachu	3109.0	78.0	peakachu	PEAKachu is a peak-caller for CLIP- and RIP-Seq data								To update		Sequence Analysis, RNA	peakachu	rnateam	https://github.com/tbischler/PEAKachu	https://github.com/bgruening/galaxytools/tree/master/tools/peakachu	0.2.0+galaxy1	peakachu	0.2.0	(0/1)	(0/1)	(1/1)	(0/1)
 pearson_correlation			Pearson_and_apos_Correlation1	Pearson and apos Correlation between any two numeric columns								To update		Statistics	pearson_correlation	devteam	https://github.com/galaxyproject/tools-devteam/tree/master/tools/pearson_correlation	https://github.com/galaxyproject/tools-devteam/tree/main/tools/pearson_correlation	1.0.0			(0/1)	(0/1)	(0/1)	(0/1)
 perf			stats_perf_tool	suitable for boolean classification problems								To update	http://osmot.cs.cornell.edu/kddcup/software.html		stats_perf_tool	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools/perf	https://github.com/bgruening/galaxytools/tree/master/tools/perf	5.11.0	perf		(0/1)	(0/1)	(0/1)	(0/1)
-pfamscan	165.0	19.0	pfamscan	Search a FASTA sequence against a library of Pfam HMM.	pfamscan	pfamscan		PfamScan	This tool is used to search a FASTA sequence against a library of Pfam HMM.	Protein sequence analysis	Sequence analysis	To update	http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/	Sequence Analysis	pfamscan	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan	https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan	1.6	pfam_scan		(1/1)	(1/1)	(1/1)	(1/1)
+pfamscan	165.0	19.0	pfamscan	Search a FASTA sequence against a library of Pfam HMM.	pfamscan	pfamscan		PfamScan	This tool is used to search a FASTA sequence against a library of Pfam HMM.	Protein sequence analysis	Sequence analysis	Up-to-date	http://ftp.ebi.ac.uk/pub/databases/Pfam/Tools/	Sequence Analysis	pfamscan	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan	https://github.com/bgruening/galaxytools/tree/master/tools/pfamscan	1.6	pfam_scan	1.6	(1/1)	(1/1)	(1/1)	(1/1)
 pg_tools			pg_dump, pg_import, pg_query	tool suite for dealing with Postgresql databases from Galaxy's history								To update	https://www.postgresql.org	Data Export, Data Source	pgtools	bgruening	https://github.com/bgruening/galaxytools/tools/pgtools	https://github.com/bgruening/galaxytools/tree/master/tools/pg_tools		postgresql		(0/3)	(0/3)	(0/3)	(0/3)
 pgsnp2gd_snp			pgSnp2gd_snp	Convert from pgSnp to gd_snp								To update		Variant Analysis	pgsnp2gd_snp	devteam	https://github.com/galaxyproject/tools-devteam/tree/master/tools/pgsnp2gd_snp	https://github.com/galaxyproject/tools-devteam/tree/main/tools/pgsnp2gd_snp	1.0.0			(0/1)	(0/1)	(0/1)	(0/1)
 pharmcat	82.0	14.0	pharmcat	Pharmacogenomics Clinical Annotation Tool								To update	https://pharmcat.org/	Variant Analysis	pharmcat	bgruening	https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat	https://github.com/bgruening/galaxytools/tree/master/tools/pharmcat				(1/1)	(0/1)	(1/1)	(0/1)