fetch all tools bot - step fetch

nomadscientist · Jun 4, 2024 · 2c8cf98 · 2c8cf98
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commit 2c8cf98
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/results/repositories01.list_tools.json b/results/repositories01.list_tools.json
@@ -2697,7 +2697,7 @@
         "bio.tool description": null,
         "EDAM operation": [],
         "EDAM topic": [],
-        "Status": "Up-to-date",
+        "Status": "To update",
         "Source": "https://github.com/MetaboHUB-MetaToul-FluxoMet/PhysioFit_Data_Manager",
         "ToolShed categories": [
             "Metabolomics"
@@ -2708,7 +2708,7 @@
         "Galaxy wrapper parsed folder": "https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/physiofit_manager",
         "Galaxy wrapper version": "1.0.1",
         "Conda id": "physiofit_data_manager",
-        "Conda version": "1.0.1"
+        "Conda version": null
     },
     {
         "Galaxy wrapper id": "skyline2isocor",

diff --git a/results/repositories01.list_tools.tsv b/results/repositories01.list_tools.tsv
@@ -80,7 +80,7 @@ pangolin	7276.0	259.0	pangolin	Phylogenetic Assignment of Named Global Outbreak
 patrist			patrist	Extract Patristic Distance From a Tree								To update	https://gist.github.com/ArtPoon/7330231e74201ded54b87142a1d6cd02	Phylogenetics	patrist	nml	https://github.com/phac-nml/patrist	https://github.com/phac-nml/galaxy_tools/tree/master/tools/patrist	0.1.2	python		(0/1)	(0/1)	(0/1)	(0/1)
 peptimapper			peptimapper_clustqualify, peptimapper_clust_to_gff, peptimapper_pep_match, peptimapper_pep_novo_tag	Proteogenomics workflow for the expert annotation of eukaryotic genomes								To update	https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-019-5431-9	Proteomics		genouest		https://github.com/genouest/galaxy-tools/tree/master/tools/peptimapper	2.0			(0/4)	(0/4)	(0/4)	(0/4)
 physiofit			physiofit	PhysioFit is a scientific tool designed to quantify cell growth parameters and uptake & production fluxes								To update	physiofit.readthedocs.io	Metabolomics	physiofit	workflow4metabolomics	https://github.com/MetaSys-LISBP/PhysioFit	https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/physiofit	3.3.5	physiofit	3.3.6	(0/1)	(0/1)	(0/1)	(1/1)
-physiofit_manager			physiofit_data_manager	Handling of physiofit input files								Up-to-date	https://github.com/MetaboHUB-MetaToul-FluxoMet/PhysioFit_Data_Manager	Metabolomics	physiofit_manager	workflow4metabolomics		https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/physiofit_manager	1.0.1	physiofit_data_manager	1.0.1	(0/1)	(0/1)	(0/1)	(1/1)
+physiofit_manager			physiofit_data_manager	Handling of physiofit input files								To update	https://github.com/MetaboHUB-MetaToul-FluxoMet/PhysioFit_Data_Manager	Metabolomics	physiofit_manager	workflow4metabolomics		https://github.com/workflow4metabolomics/tools-metabolomics/tree/master/tools/physiofit_manager	1.0.1	physiofit_data_manager		(0/1)	(0/1)	(0/1)	(1/1)
 plasmid_profiler			plasmid_profiler	Explores plasmid content in WGS data								To update			plasmid_profiler	nml		https://github.com/phac-nml/galaxy_tools/tree/master/tools/plasmid_profiler	0.1.6	r		(0/1)	(0/1)	(0/1)	(0/1)
 plasmid_profiler_suite				Plasmid Profiler suite defining all dependencies for Plasmid Profiler								To update		Sequence Analysis	suite_plasmid_profiler	nml		https://github.com/phac-nml/galaxy_tools/tree/master/tools/plasmid_profiler_suite				(0/1)	(0/1)	(0/1)	(0/1)
 plasmidspades			plasmidspades	Genome assembler for assemblying plasmid								To update		Assembly	plasmidspades	nml		https://github.com/phac-nml/galaxy_tools/tree/master/tools/plasmidspades	1.1	spades	3.15.5	(0/1)	(0/1)	(0/1)	(0/1)