Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

REL: 1.1.9 #2884

Merged
merged 14 commits into from
Feb 25, 2019
Merged

REL: 1.1.9 #2884

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
14 commits
Select commit Hold shift + click to select a range
bba3eeb
DOC: 1.1.9 changelog
effigies Feb 22, 2019
fba0cd7
MNT: Version 1.1.9
effigies Feb 22, 2019
8cde64a
MNT: Update .mailmap, .zenodo.json
effigies Feb 22, 2019
a6d1d6e
MNT: Update mailmap to avoid renames in script
effigies Feb 22, 2019
f079ed2
ENH: Add zenodo updating script
effigies Feb 22, 2019
298f819
MNT: Add Oliver Contier name to .zenodo.json
Feb 23, 2019
073f696
MNT: Update .zenodo ordering
effigies Feb 24, 2019
2d219a1
Update .zenodo.json
qtabs Feb 25, 2019
e82609e
MNT: Update zenodo ordering
effigies Feb 25, 2019
913e68b
add to zenodo
anibalsolon Feb 25, 2019
7e86ff4
MNT: Add kchawla-pi to Zenodo, update mailmap and ordering
effigies Feb 25, 2019
34a7eff
Merge remote-tracking branch 'upstream/master' into rel/1.1.9
effigies Feb 25, 2019
06ebcfb
MNT: Add Katherine Bottenhorn, Paul Mihai to Zenodo
effigies Feb 25, 2019
5ced29f
MNT: Update changelog
effigies Feb 25, 2019
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
55 changes: 39 additions & 16 deletions .mailmap
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -10,10 +10,13 @@ Alexander Schaefer <[email protected]> aschaefer <aschaefer@aschaefer-U36
Alexandre M. Savio <[email protected]> Alexandre M. S <[email protected]>
Alexandre M. Savio <[email protected]> Alexandre M. S <[email protected]>
Alexandre M. Savio <[email protected]> Alexandre Manhaes Savio <[email protected]>
Andrew Floren <[email protected]> afloren <[email protected]>
Andrey Chetverikov <[email protected]> Andrey Chetverikov <[email protected]>
Andrey Chetverikov <[email protected]> achetverikov <[email protected]>
Anibal Sólon Heinsfeld <[email protected]> anibalsolon <[email protected]>
Anisha Keshavan <[email protected]> Anisha Keshavan <[email protected]>
Anisha Keshavan <[email protected]> akeshavan <[email protected]>
Ariel Rokem <[email protected]> Ariel Rokem <[email protected]>
Ariel Rokem <[email protected]> arokem <[email protected]>
Ariel Rokem <[email protected]> arokem <[email protected]>
Arman Eshaghi <[email protected]> armaneshaghi <[email protected]>
Expand All @@ -22,26 +25,19 @@ Ashely Gillman <[email protected]> ashgillman <[email protected]>
Basille Pinsard <[email protected]> bpinsard <[email protected]>
Basille Pinsard <[email protected]> bpinsard <[email protected]>
Ben Cipollini <[email protected]> Ben Cipollini <[email protected]>
Benjamin Acland <[email protected]> Ben Acland <[email protected]>
Benjamin Yvernault <[email protected]> Benjamin Yvernault <[email protected]>
Benjamin Yvernault <[email protected]> byvernault <[email protected]>
Blake Dewey <[email protected]> Blake Dewey <[email protected]>
Blake Dewey <[email protected]> blakedewey <[email protected]>
Blake Dewey <[email protected]> blakedewey <[email protected]>
Brendan Moloney <[email protected]> moloney <[email protected]>
Caroline Froehlich <[email protected]> carolFrohlich <[email protected]>
Chris Filo Gorgolewski <[email protected]> Chris Filo Gorgolewski <filo@filo-Precision-M6500.(none)>
Chris Filo Gorgolewski <[email protected]> Chris Filo Gorgolewski <[email protected]>
Chris Filo Gorgolewski <[email protected]> Chris Filo Gorgolewski <[email protected]>
Chris Filo Gorgolewski <[email protected]> Chris Gorgolewski <[email protected]>
Chris Filo Gorgolewski <[email protected]> Krzysztof Gorgolewski <[email protected]>
Chris Filo Gorgolewski <[email protected]> filo <filo@filo-Precision-M6500>
Chris Filo Gorgolewski <[email protected]> filo <filo@filo-dtc-laptop>
Chris Filo Gorgolewski <[email protected]> filo <filo@filolaptop>
Christopher J. Markiewicz <[email protected]> Chris Markiewicz <[email protected]>
Christopher J. Markiewicz <[email protected]> Chris Markiewicz <[email protected]>
Christopher J. Markiewicz <[email protected]> Christopher J. Johnson <[email protected]>
Christopher J. Markiewicz <[email protected]> Christopher J. Markiewicz <[email protected]>
Christopher J. Markiewicz <[email protected]> Christopher J. Markiewicz <[email protected]>
Christopher J. Markiewicz <[email protected]> Chris Markiewicz <[email protected]>
Cindee Madison <[email protected]> cindeem
Cindee Madison <[email protected]> cindeem <>
Colin Buchanan <[email protected]> Colin Buchanan <cbuchanan@cray4.(none)>
Expand All @@ -54,10 +50,13 @@ Daniel Ginsburg <[email protected]> danginsburg <daniel.gins
Daniel McNamee <[email protected]> danmc <[email protected]>
David Ellis <[email protected]> David Ellis <[email protected]>
David Ellis <[email protected]> David Ellis <[email protected]>
David Mordom <[email protected]> dmordom <[email protected]>
David Welch <[email protected]> David Welch <[email protected]>
Dimitri Papadopoulos Orfanos <[email protected]> Dimitri Papadopoulos <[email protected]>
Dmytro <[email protected]> belevtsoff <[email protected]>
Dylan Nielson <[email protected]> Dylan <[email protected]>
Dylan M. Nielson <[email protected]> Dylan <[email protected]>
Dylan M. Nielson <[email protected]> Dylan Nielson <[email protected]>
Eduard Ort <[email protected]> eort <[email protected]>
Elizabeth DuPre <[email protected]> emdupre <[email protected]>
Erik Ziegler <[email protected]> Erik <[email protected]>
Erik Ziegler <[email protected]> Erik Ziegler <[email protected]>
Expand All @@ -73,6 +72,8 @@ Gael Varoquaux <[email protected]> GaelVaroquaux
Gael Varoquaux <[email protected]> GaelVaroquaux <[email protected]>
Gavin Cooper <[email protected]> gjcooper <[email protected]>
Gilles de Hollander <[email protected]> Gilles86 <[email protected]>
Gio Piantoni <[email protected]> Gio at UMCU <[email protected]>
Guillaume Flandin <[email protected]> Guillaume <[email protected]>
Hans Johnson <[email protected]> Hans Johnson <[email protected]>
Hans Johnson <[email protected]> hjmjohnson <[email protected]>
Horea Christian <[email protected]> Horea Christian <[email protected]>
Expand All @@ -90,12 +91,16 @@ Jens Kleesiek <[email protected]> JensNRAD <[email protected]>
Jessica Forbes <[email protected]> jessicaforbes <[email protected]>
Jérémy Guillon <[email protected]> GUILLON Jeremy <[email protected]>
Joerg Stadler <[email protected]> Joerg Stadler <[email protected]>
Joerg Stadler <[email protected]> Joerg Stadler <[email protected]>
Joerg Stadler <[email protected]> Jörg Stadler <[email protected]>
John Lee <[email protected]> john anthony lee <[email protected]>
John Lee <[email protected]> leej3 <[email protected]>
Joke Durnez <[email protected]> jokedurnez <[email protected]>
Josh Warner <[email protected]> JDWarner <[email protected]>
Josh Warner <[email protected]> Josh Warner (Mac) <[email protected]>
Kai Schlamp <[email protected]> medihack <[email protected]>Jessica Forbes <[email protected]> jessicaforbes <[email protected]>
Katie Bottenhorn <[email protected]> 62442katieb <[email protected]>
Kai Schlamp <[email protected]> medihack <[email protected]>
Katherine Bottenhorn <[email protected]> 62442katieb <[email protected]>
Katherine Bottenhorn <[email protected]> Katie Bottenhorn <[email protected]>
Kesshi Jordan <[email protected]> Kesshi Jordan <[email protected]>
Kesshi Jordan <[email protected]> Kesshi Jordan <[email protected]>
Kesshi Jordan <[email protected]> Kesshi Jordan <[email protected]>
Expand All @@ -105,6 +110,18 @@ Kesshi Jordan <[email protected]> Kesshi jordan <[email protected]
Kesshi Jordan <[email protected]> kesshijordan <[email protected]>
Kevin Sitek <[email protected]> sitek <[email protected]>
Kevin Sitek <[email protected]> sitek <[email protected]>
Kornelius Podranski <[email protected]> Kornelius <[email protected]>
Krzysztof J. Gorgolewski <[email protected]> Chris Filo Gorgolewski <[email protected]>
Krzysztof J. Gorgolewski <[email protected]> Chris Filo Gorgolewski <filo@filo-Precision-M6500.(none)>
Krzysztof J. Gorgolewski <[email protected]> Chris Filo Gorgolewski <[email protected]>
Krzysztof J. Gorgolewski <[email protected]> Chris Filo Gorgolewski <[email protected]>
Krzysztof J. Gorgolewski <[email protected]> Chris Gorgolewski <[email protected]>
Krzysztof J. Gorgolewski <[email protected]> Krzysztof Gorgolewski <[email protected]>
Krzysztof J. Gorgolewski <[email protected]> filo <filo@filo-Precision-M6500>
Krzysztof J. Gorgolewski <[email protected]> filo <filo@filo-Precision-M6500>
Krzysztof J. Gorgolewski <[email protected]> filo <filo@filo-dtc-laptop>
Krzysztof J. Gorgolewski <[email protected]> filo <filo@filolaptop>
Kshitij Chawla <[email protected]> Kshitij Chawla (kchawla-pi) <[email protected]>
Leonie Lampe <[email protected]> Leonie Lmape <[email protected]>
Lukas Snoek <[email protected]> Lukas Snoek <[email protected]>
Marcel Falkiewicz <[email protected]> Marcel Falkiewicz <[email protected]>
Expand All @@ -113,39 +130,45 @@ Mathias Goncalves <[email protected]> mathiasg <[email protected]>
Mathieu Dubois <[email protected]> Mathieu Dubois <[email protected]>
Mathieu Dubois <[email protected]> duboism <[email protected]>
Matteo Mancini <[email protected]> matteomancini <[email protected]>
Matteo Visconti dOC <[email protected]> Matteo Visconti dOC <[email protected]>
Matteo Visconti dOC <[email protected]> mvdoc <[email protected]>
Matteo Visconti di Oleggio Castello <[email protected]> Matteo Visconti dOC <[email protected]>
Matteo Visconti di Oleggio Castello <[email protected]> Matteo Visconti dOC <[email protected]>
Matteo Visconti di Oleggio Castello <[email protected]> mvdoc <[email protected]>
Michael Clark <[email protected]> Clark <[email protected]>
Michael Dayan <[email protected]> Michael <[email protected]>
Michael Dayan <[email protected]> Michael <[email protected]>
Michael Dayan <[email protected]> mick-d <mid2021@CHUCK.(none)>
Michael Notter <[email protected]> miykael <[email protected]>
Michael Philipp Notter <[email protected]> Michael Notter <[email protected]>
Michael Philipp Notter <[email protected]> miykael <[email protected]>
Michael Waskom <[email protected]> Michael Waskom <[email protected]>
Michael Waskom <[email protected]> Michael Waskom <[email protected]>
Michael Waskom <[email protected]> Michael Waskom <[email protected]>
Michael Waskom <[email protected]> mwaskom <[email protected]>
Michael Waskom <[email protected]> mwaskom <[email protected]>
Michael Waskom <[email protected]> mwaskom <[email protected]>
Miguel Molina-Romero <[email protected]> Miguel Molina <[email protected]>
Oliver Contier <[email protected]> oliver-contier <[email protected]>
Oscar Esteban <[email protected]> Oscar Esteban <code@oscaresteban>
Oscar Esteban <[email protected]> oesteban <[email protected]>
Pablo Polosecki <[email protected]> pipolose <[email protected]>
Pablo Polosecki <[email protected]> pipolose <[email protected]>
Paul Sharp <[email protected]> psharp1289 <[email protected]>
Ranjit Khanuja <[email protected]> RanjitK <[email protected]>
Ross Markello <[email protected]> Ross Markello <[email protected]>
Russell Poldrack <[email protected]> Russ Poldrack <[email protected]>
Russell Poldrack <[email protected]> poldrack <[email protected]>
Salma Bougacha <[email protected]> Salma BOUGACHA <[email protected]>
Salma Bougacha <[email protected]> salma <[email protected]>
Salma Bougacha <[email protected]> salma1601 <[email protected]>
Sami Kristian Andberg <[email protected]> Sami Andberg <[email protected]>
Satrajit Ghosh <[email protected]> Satrajit Ghosh <[email protected]>
Sebastian Urchs <[email protected]> sebastian <[email protected]>
Sharad Sikka <[email protected]> ssikka <[email protected]>
Shariq Iqbal <[email protected]> shariqiqbal2810 <[email protected]>
Shariq Iqbal <[email protected]> shariqiqbal2810 <[email protected]>
Shoshana Berleant <[email protected]> Shoshana Berleant <nope>
Shoshana Berleant <[email protected]> Shoshana Berleant <[email protected]>
Simon R <[email protected]> Simon Rothmeier <[email protected]>
Simon Rothmei <[email protected]> Simon R <[email protected]>
Simon Rothmei <[email protected]> Simon Rothmeier <[email protected]>
Siqi Liu <[email protected]> siqi liu <[email protected]>
Siqi Liu <[email protected]> sql <[email protected]>
Steven Giavasis <[email protected]> Steven Giavasis <[email protected]>
Expand Down
90 changes: 62 additions & 28 deletions .zenodo.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -141,21 +141,26 @@
{
"name": "Berleant, Shoshana"
},
{
"affiliation": "Institute for Biomedical Engineering, ETH and University of Zurich",
"name": "Horea, Christian",
"orcid": "0000-0001-7037-2449"
},
{
"affiliation": "Dartmouth College: Hanover, NH, United States",
"name": "Halchenko, Yaroslav O.",
"orcid": "0000-0003-3456-2493"
},
{
"affiliation": "Institute for Biomedical Engineering, ETH and University of Zurich",
"name": "Christian, Horea",
"orcid": "0000-0001-7037-2449"
},
{
"affiliation": "UC San Diego",
"name": "Cipollini, Ben",
"orcid": "0000-0002-7782-0790"
},
{
"affiliation": "ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.",
"name": "Guillon, Je\u0301re\u0301my",
"orcid": "0000-0002-2672-7510"
},
{
"affiliation": "Montreal Neurological Institute and Hospital",
"name": "Markello, Ross",
Expand Down Expand Up @@ -186,7 +191,7 @@
},
{
"affiliation": "Athena EPI, Inria Sophia-Antipolis",
"name": "Wassermann , Demian",
"name": "Wassermann, Demian",
"orcid": "0000-0001-5194-6056"
},
{
Expand All @@ -196,7 +201,7 @@
},
{
"affiliation": "Vrije Universiteit, Amsterdam",
"name": "Gilles de Hollander",
"name": "de Hollander, Gilles",
"orcid": "0000-0003-1988-5091"
},
{
Expand All @@ -210,6 +215,11 @@
{
"name": "Buchanan, Colin"
},
{
"affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.",
"name": "Tabas, Alejandro",
"orcid": "0000-0002-8643-1543"
},
{
"name": "Tungaraza, Rosalia"
},
Expand Down Expand Up @@ -251,6 +261,10 @@
{
"name": "Dubois, Mathieu"
},
{
"name": "Heinsfeld, Anibal S\u00f3lon",
"orcid": "0000-0002-2050-0614"
},
{
"affiliation": "Child Mind Institute",
"name": "Frohlich, Caroline"
Expand All @@ -259,6 +273,11 @@
"affiliation": "University of Iowa",
"name": "Welch, David"
},
{
"affiliation": "Florida International University",
"name": "Bottenhorn, Katherine",
"orcid": "0000-0002-7796-8795"
},
{
"name": "Kent, James"
},
Expand Down Expand Up @@ -328,6 +347,11 @@
{
"name": "Ghayoor, Ali"
},
{
"affiliation": "Otto-von-Guericke-University Magdeburg, Germany",
"name": "Contier, Oliver",
"orcid": "0000-0002-2983-4709"
},
{
"name": "K\u00fcttner, Ren\u00e9"
},
Expand Down Expand Up @@ -358,6 +382,11 @@
"affiliation": "The University of Sydney",
"name": "Liu, Siqi"
},
{
"affiliation": "Leibniz Institute for Neurobiology",
"name": "Stadler, J\u00f6rg",
"orcid": "0000-0003-4313-129X"
},
{
"affiliation": "University of Pennsylvania",
"name": "Kahn, Ari E.",
Expand All @@ -377,11 +406,6 @@
"affiliation": "MPI CBS Leipzig, Germany",
"name": "Lampe, Leonie"
},
{
"affiliation": "Leibniz Institute for Neurobiology",
"name": "Stadler, J\u00f6rg",
"orcid": "0000-0003-4313-129X"
},
{
"affiliation": "State Key Laboratory of Cognitive Neuroscience and Learning & IDG/McGovern Institute for Brain Research, Beijing Normal University, Beijing, China; Max Planck Institute for Psycholinguistics, Nijmegen, the Netherlands",
"name": "Kong, Xiang-Zhen",
Expand Down Expand Up @@ -410,6 +434,11 @@
"name": "Grignard, Martin",
"orcid": "0000-0001-5549-1861"
},
{
"affiliation": "INRIA-Saclay, Team Parietal",
"name": "Chawla, Kshitij",
"orcid": "0000-0002-7517-6321"
},
{
"name": "Salvatore, John"
},
Expand Down Expand Up @@ -463,11 +492,6 @@
{
"name": "Cheung, Brian"
},
{
"affiliation": "The University of Texas at Austin",
"name": "Floren, Andrew",
"orcid": "0000-0003-3618-2056"
},
{
"name": "Urchs, Sebastian"
},
Expand All @@ -476,20 +500,30 @@
"name": "Durnez, Joke",
"orcid": "0000-0001-9030-2202"
},
{
"affiliation": "CNRS, UMS3552 IRMaGe",
"name": "Condamine, Eric",
"orcid": "0000-0002-9533-3769"
},
{
"affiliation": "Technische Universit\u00e4t Dresden, Faculty of Medicine, Department of Child and Adolescent Psychiatry",
"name": "Geisler, Daniel",
"orcid": "0000-0003-2076-5329"
},
{
"affiliation": "University of illinois urbana champaign",
"name": "Sharp, Paul"
"affiliation": "The University of Texas at Austin",
"name": "Floren, Andrew",
"orcid": "0000-0003-3618-2056"
},
{
"affiliation": "Institute of Neuroinformatics, ETH/University of Zurich",
"name": "Gerhard, Stephan",
"orcid": "0000-0003-4454-6171"
},
{
"affiliation": "University of Illinois Urbana Champaign",
"name": "Sharp, Paul"
},
{
"affiliation": "Technical University Munich",
"name": "Molina-Romero, Miguel",
Expand Down Expand Up @@ -540,10 +574,6 @@
{
"name": "Tarbert, Claire"
},
{
"affiliation": "Vrije Universiteit Amsterdam",
"name": "Ort, Eduard"
},
{
"name": "Nickson, Thomas"
},
Expand All @@ -564,6 +594,10 @@
{
"name": "Flandin, Guillaume"
},
{
"affiliation": "Vrije Universiteit Amsterdam",
"name": "Ort, Eduard"
},
{
"name": "Shachnev, Dmitry"
},
Expand Down Expand Up @@ -600,15 +634,15 @@
{
"name": "McDermottroe, Conor"
},
{
"affiliation": "Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.",
"name": "Mihai, Paul Glad",
"orcid": "0000-0001-5715-6442"
},
{
"affiliation": "MIT, HMS",
"name": "Ghosh, Satrajit",
"orcid": "0000-0002-5312-6729"
},
{
"affiliation": "ARAMIS LAB, Brain and Spine Institute (ICM), Paris, France.",
"name": "Guillon, Jeremy",
"orcid": "0000-0002-2672-7510"
}
],
"keywords": [
Expand Down
16 changes: 16 additions & 0 deletions doc/changelog/1.X.X-changelog
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,3 +1,19 @@
1.1.9 (February 25, 2019)
=========================

##### [Full changelog](https://github.com/nipy/nipype/milestone/30?closed=1)

* FIX: Make positional arguments to LaplacianThickness require previous argument (https://github.com/nipy/nipype/pull/2848)
* FIX: Import math and csv modules for bids_gen_info (https://github.com/nipy/nipype/pull/2881)
* FIX: Ensure outputs can be listed in camino.ProcStreamlines by defining instance variable (https://github.com/nipy/nipype/pull/2739)
* ENH: Allow afni.MaskTool to take multiple input files (https://github.com/nipy/nipype/pull/2892)
* ENH: Add flags dictionary input to spm.Level1Design (https://github.com/nipy/nipype/pull/2861)
* ENH: Threshold stddev once only in TSNR (https://github.com/nipy/nipype/pull/2883)
* ENH: Add workbench.CiftiSmooth interface (https://github.com/nipy/nipype/pull/2871)
* DOC: Replace initialism typo in comment with intended phrase (https://github.com/nipy/nipype/pull/2875)
* DOC: Fix typos in ANTs Registration input documentation (https://github.com/nipy/nipype/pull/2869)


1.1.8 (January 28, 2019)
========================

Expand Down
Loading