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65 Open 241 Closed
65 Open 241 Closed
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Issues list

MultiQC is not consolidating QUAST reports for assemblies bug Something isn't working
#741 opened Dec 29, 2024 by amizeranschi
When running the pipeline with --skip_clipping and --keep_phix: ERROR ~ No such variable: ch_phix_db_file bug Something isn't working
#740 opened Dec 29, 2024 by amizeranschi
Update multiqc config to support new modules good first issue Good for newcomers
#739 opened Dec 22, 2024 by jfy133
For unbinned contigs, run CAT in "contig mode" (CAT_pack contigs) instead of "bin mode" (CAT_pack bins) enhancement New feature or request
#735 opened Dec 17, 2024 by amizeranschi
1
Create a summary report enhancement New feature or request
#728 opened Dec 10, 2024 by dialvarezs
1
Consider using Taxometer (From VAMB) for taxonomic classification of metagenomic contigs enhancement New feature or request
#722 opened Dec 3, 2024 by jfy133
MetaEuk doesn't work with databases created using the commands metaeuk createdb or mmseqs createdb bug Something isn't working
#721 opened Dec 2, 2024 by amizeranschi
@jfy133
1
GTDBTK issue bug Something isn't working
#720 opened Nov 29, 2024 by ycuesta
1
Metaspades terminated with an error exit status (21) bug Something isn't working
#719 opened Nov 29, 2024 by ycuesta
3
undefined parameter host_genomes with -r 3.2.0 and -r 3.2.1 bug Something isn't working
#715 opened Nov 22, 2024 by Thomieh73
@jfy133
1
Consider binette as alternative bin refinement tool
#714 opened Nov 13, 2024 by jfy133
Be able to run multiple bin QC metrics enhancement New feature or request
#713 opened Nov 7, 2024 by harper357
@dialvarezs
12
--host_fasta_bowtie2index path taken for bowtie -S output file bug Something isn't working
#694 opened Oct 16, 2024 by MeriamOs
@jfy133
2
Optional skipping of short-read input to Filtlong for large datasets enhancement New feature or request
#691 opened Oct 14, 2024 by ddomman
2
Generate taxprofiler samplesheet from mag
#687 opened Oct 10, 2024 by vagkaratzas
1
@vagkaratzas
Create a samplesheet for funcscan enhancement New feature or request
#686 opened Oct 10, 2024 by jasmezz
@jasmezz
1
Consider metaMDBG as another long-read assembler enhancement New feature or request
#662 opened Sep 5, 2024 by jfy133
@muabnezor
1
Add nanoq as alternative for long-read filtering enhancement New feature or request
#661 opened Sep 5, 2024 by jfy133
@muabnezor
Add (meta)Flye for long-read only assembly enhancement New feature or request
#659 opened Sep 5, 2024 by jfy133
@muabnezor
Consider CarpeDeam for (ancient DNA) damage aware assembler enhancement New feature or request
#650 opened Aug 12, 2024 by jfy133
Add module pyrodigal enhancement New feature or request
#624 opened Jun 3, 2024 by jasmezz
Enter at postbinning stage enhancement New feature or request
#623 opened Jun 3, 2024 by prototaxites
9
Allow Prodigal to create a gbk file instead of the gff enhancement New feature or request
#622 opened Jun 3, 2024 by amizeranschi
CAT_DB process has harcoded CAT subdirectory names bug Something isn't working
#611 opened Apr 18, 2024 by maxibor
@jfy133
2
Genome taxnomic classification with Sourmash enhancement New feature or request
#609 opened Apr 5, 2024 by prototaxites
3
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