Fix up pathogen-repo-build #373

Job	Run time
lint	5s
test-setup-nextstrain-cli	50s
test-docs-ci-conda / build-conda	40s
test-docs-ci-pip / build-conda	0s
test-docs-ci-conda / build-pip	0s
test-pathogen-repo-ci / configuration	2s
test-docs-ci-pip / build-pip	52s
test-pathogen-repo-ci-failure / configuration	3s
test-pathogen-repo-ci-no-example-data / configuration	2s
test-pathogen-repo-build (aws-batch) / workflow-context	4s
test-pathogen-repo-build (conda) / workflow-context	3s
test-pathogen-repo-build (docker) / workflow-context	4s
test-pathogen-repo-ci-no-example-data / build (docker)	1m 21s
test-pathogen-repo-ci-no-example-data / build (conda)	1m 43s
test-pathogen-repo-ci / build (docker)	1m 34s
test-pathogen-repo-ci / build (conda)	1m 47s
test-pathogen-repo-build (conda) / run-build	1m 35s
test-pathogen-repo-ci-failure / build (docker)	52s
test-pathogen-repo-ci-failure / build (conda)	1m 25s
test-pathogen-repo-build (docker) / run-build	1m 33s
test-pathogen-repo-build (aws-batch) / run-build	3m 59s
	18m 34s

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