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Fix up pathogen-repo-build #373

Fix up pathogen-repo-build

Fix up pathogen-repo-build #373

Triggered via pull request February 5, 2024 23:37
Status Success
Total duration 4m 22s
Artifacts 9

ci.yaml

on: pull_request
test-pathogen-repo-ci-failure  /  configuration
3s
test-pathogen-repo-ci-failure / configuration
test-pathogen-repo-ci-no-example-data  /  configuration
2s
test-pathogen-repo-ci-no-example-data / configuration
test-pathogen-repo-ci  /  configuration
2s
test-pathogen-repo-ci / configuration
test-setup-nextstrain-cli
50s
test-setup-nextstrain-cli
test-docs-ci-conda  /  build-conda
40s
test-docs-ci-conda / build-conda
test-docs-ci-conda  /  build-pip
0s
test-docs-ci-conda / build-pip
test-docs-ci-pip  /  build-conda
0s
test-docs-ci-pip / build-conda
test-docs-ci-pip  /  build-pip
52s
test-docs-ci-pip / build-pip
lint
5s
lint
Matrix: test-pathogen-repo-build
Matrix: test-pathogen-repo-ci-failure / build
Matrix: test-pathogen-repo-ci-no-example-data / build
Matrix: test-pathogen-repo-ci / build
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Annotations

2 errors and 14 warnings
test-pathogen-repo-ci-failure / build (docker)
Process completed with exit code 1.
test-pathogen-repo-ci-failure / build (conda)
Process completed with exit code 1.
test-pathogen-repo-build (conda) / workflow-context
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/github-script@v6. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (aws-batch) / workflow-context
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/github-script@v6. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (docker) / workflow-context
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/github-script@v6. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-docs-ci-conda / build-conda
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: conda-incubator/setup-miniconda@v2. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-setup-nextstrain-cli
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-failure / build (docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-no-example-data / build (docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-failure / build (conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (conda) / run-build
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci / build (docker)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (docker) / run-build
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci-no-example-data / build (conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-ci / build (conda)
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: docker/login-action@v2, actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.
test-pathogen-repo-build (aws-batch) / run-build
Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: actions/setup-python@v3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Artifacts

Produced during runtime
Name Size
build-output-aws-batch Expired
151 KB
build-output-conda Expired
152 KB
build-output-docker Expired
152 KB
outputs-test-pathogen-repo-ci-conda Expired
276 KB
outputs-test-pathogen-repo-ci-docker Expired
279 KB
outputs-test-pathogen-repo-ci-failure-conda Expired
365 Bytes
outputs-test-pathogen-repo-ci-failure-docker Expired
365 Bytes
outputs-test-pathogen-repo-ci-no-example-data-conda Expired
149 KB
outputs-test-pathogen-repo-ci-no-example-data-docker Expired
149 KB