Fix error with logging filepath

neuroinformatics-unit · Nov 5, 2024 · e11b2e2 · e11b2e2
1 parent b7a1f34
commit e11b2e2
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Showing 2 changed files with 4 additions and 3 deletions.
diff --git a/examples/example_usage.py b/examples/example_usage.py
@@ -15,8 +15,9 @@ def main(
     """
     Draft usage of the pipeline, now consisting of read and write operations.
     """
+    (output_path / "logs").mkdir(exist_ok=True)
     logging.basicConfig(
-        filename=output_path / "logs" / "pipeline.log",
+        filename=str(output_path / "logs" / "pipeline.log"),
         level=logging.INFO,
         format="%(asctime)s - %(message)s",
     )

diff --git a/examples/example_usage.sh b/examples/example_usage.sh
@@ -1,5 +1,5 @@
 #! /bin/bash
 python ./examples/example_usage.py \
-    /Volumes/winstor/swc/margrie/SimonWeiler/RawData/Invivo_imaging/3photon_rotation/shared/ \
-    /Users/laura/local_data/calcimaut/ \
+    /nfs/winstor/margrie/SimonWeiler/RawData/Invivo_imaging/3photon_rotation/shared/ \
+    /ceph/margrie/laura/cimaut/ \
     --folder_read_pattern '2*' \