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@neuroinformatics-unit

SWC/GCNU Neuroinformatics Unit

Neuroscience & ML Research Software Engineering Group
README.md

Neuroinformatics Unit

The Neuroinformatics Unit (NIU) is a Research Software Engineering team based at the Sainsbury Wellcome Centre and the Gatsby Computational Neuroscience Unit.

The NIU is dedicated to the development of high quality, accurate, robust, easy to use and maintainable open-source software for neuroscience and machine learning. We collaborate with researchers and other software engineers to advance research in the two research centres and make new algorithms and tools available to the global community.

We also lead development of the BrainGlobe Initiative and contribute to various Sainsbury Wellcome Centre and other open-source tools.

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  1. movement movement Public

    Python tools for analysing body movements across space and time

    Python 110 10

  2. NeuroBlueprint NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    17 1

  3. datashuttle datashuttle Public

    Tool for the creation, validation and transfer of neuroscience project folders.

    Python 15 3

  4. python-cookiecutter python-cookiecutter Public

    Utility to create a basic Python project structure with tests, CI etc.

    Python 25 3

  5. fancylog fancylog Public

    Fancier logging with python.

    Python 12 4

  6. spikewrap spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    Python 13

Repositories

Showing 10 of 57 repositories
  • derotation Public

    Derotate images acquired via 2-photon or 3-photon calcium imaging

    neuroinformatics-unit/derotation’s past year of commit activity
    Python 7 BSD-3-Clause 0 13 1 Updated Dec 19, 2024
  • suite2p Public Forked from MouseLand/suite2p

    cell detection in calcium imaging recordings

    neuroinformatics-unit/suite2p’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 243 0 0 Updated Dec 19, 2024
  • movement Public

    Python tools for analysing body movements across space and time

    neuroinformatics-unit/movement’s past year of commit activity
    Python 110 BSD-3-Clause 10 91 9 Updated Dec 19, 2024
  • slides-qbatch-template-building Public

    Slides for NIU meeting about parallelising template building (and possibly other things)

    neuroinformatics-unit/slides-qbatch-template-building’s past year of commit activity
    SCSS 0 BSD-3-Clause 0 0 0 Updated Dec 19, 2024
  • ethology Public

    Data processing tools for animal behavioural analysis

    neuroinformatics-unit/ethology’s past year of commit activity
    Python 8 BSD-3-Clause 0 16 2 Updated Dec 17, 2024
  • spikewrap Public

    A tool to streamline extracellular electrophysiology analysis using SpikeInterface

    neuroinformatics-unit/spikewrap’s past year of commit activity
    Python 13 BSD-3-Clause 0 25 3 Updated Dec 16, 2024
  • translocator-models Public

    Evaluate the model for the translocator project

    neuroinformatics-unit/translocator-models’s past year of commit activity
    Python 2 BSD-3-Clause 0 0 0 Updated Dec 16, 2024
  • actions Public

    Re-usable GitHub Action scripts

    neuroinformatics-unit/actions’s past year of commit activity
    10 MIT 3 5 0 Updated Dec 13, 2024
  • photon-mosaic Public

    Automate analysis and tracking of multiple calcium imaging datasets to compare parameters choices

    neuroinformatics-unit/photon-mosaic’s past year of commit activity
    Python 0 BSD-3-Clause 0 1 1 Updated Dec 11, 2024
  • NeuroBlueprint Public

    Lightweight data specification for systems neuroscience, inspired by BIDS.

    neuroinformatics-unit/NeuroBlueprint’s past year of commit activity
    17 CC-BY-4.0 1 9 0 Updated Dec 10, 2024
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