Optophysiology project and goals #108
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adamltyson
approved these changes
Dec 9, 2024
| (projects-optophysiology)= | ||
| ## Optophysiology | ||
| ::::{grid} 1 1 1 1 | ||
| :::{grid-item-card} {fas}`sun;sd-text-primary` PhotonMosaic |
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To match the repo
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| :::{grid-item-card} {fas}`sun;sd-text-primary` PhotonMosaic | |
| :::{grid-item-card} {fas}`sun;sd-text-primary` photon-mosaic |
| ::::{grid} 1 1 1 1 | ||
| :::{grid-item-card} {fas}`sun;sd-text-primary` PhotonMosaic | ||
| :link: https://github.com/neuroinformatics-unit/photon-mosaic | ||
| PhotonMosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and Caiman into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. |
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| PhotonMosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and Caiman into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. | |
| PhotonMosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and CaImAn into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. |
| ::::{grid} 1 1 1 1 | ||
| :::{grid-item-card} {fas}`sun;sd-text-primary` PhotonMosaic | ||
| :link: https://github.com/neuroinformatics-unit/photon-mosaic | ||
| PhotonMosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and Caiman into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. |
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| PhotonMosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and Caiman into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. | |
| photon-mosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and Caiman into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. |
| :link: https://github.com/neuroinformatics-unit/photon-mosaic | ||
| PhotonMosaic simplifies the analysis of multi-photon calcium imaging data by integrating algorithms from tools like Suite2p and Caiman into a modular pipeline. Researchers can evaluate, compare, and combine methods for each processing step, such as registration or source extraction, and explore metrics to identify the best fit for their datasets. | ||
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| With support for local or cluster-based parallelization, PhotonMosaic provides visualization tools, reports, and guides to streamline decision-making and enhance reproducibility. |
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| With support for local or cluster-based parallelization, PhotonMosaic provides visualization tools, reports, and guides to streamline decision-making and enhance reproducibility. | |
| With support for local or cluster-based parallelization, photon-mosaic provides visualization tools, reports, and guides to streamline decision-making and enhance reproducibility. |
| ::::{grid} 1 1 1 1 | ||
| :::{grid-item-card} {fas}`stroopwafel;sd-text-primary` derotation | ||
| :link: https://github.com/neuroinformatics-unit/derotation | ||
| A python library to solve sample-rotation artifacts on movies acquired with a line scanning microscope. |
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| A python library to solve sample-rotation artifacts on movies acquired with a line scanning microscope. | |
| A python library to solve sample-rotation artifacts in multiphoton imaging data acquired with a line scanning microscope. |
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Description
What is this PR
Why is this PR needed?
Adds a description of current efforts on optophysiology:
Fixes a few broken links
What does this PR do?
Edits projects.md file and files in which links were broken
References
#106
How has this PR been tested?
Tested locally ✅
Checklist: